Detail information of Os11g0703900_circ_g.5


General Information
CircRNA Name Os11g0703900_circ_g.5
ID in PlantcircBase osa_circ_010092
Alias NA
Organism Oryza sativa
Position chr11: 28804541-28804847  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os11g0703900
Parent gene annotation Heat shock protein 70. (Os11t0703900-01);Similar to Heat shock p
rotein 70. (Os11t0703900-02)
Parent gene strand +
Alternative splicing Os11g0703900_circ_g.1 Os11g0703900_circ_g.2 Os11g0703900_circ_g.3 Os11g0703900_circ_g.4 Os11g0703900_circ_g.6 Os11g0703900_circ_g.7 Os11g0703900_circ_g.8 Os11g0703900_circ_g.9 Os11g0703900_circ_g.10 Os11g0703900_circ_g.11 Os11g0703900_circ_g.12 Os11g0703900_circ_g.13
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   AT-TG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTGTTGCATTTTGAATCTGTGTTGATGTGATTTAAGTTGTTGGCAGTGCTTTTTGCATACTAT
TTGAATTTGTGGATGGTTAGCAGTCAGTACACTAGGgtaactacttattccctgctcctcagtc
ctctctctttctctctctccccccttagatctcatctctaaggtcttcgtcgtcgtcgtatgct
agatctac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAACTACTTATTCCCTGCTCCTCAGTCCTCTCTCTTTCTCTCTCTCCCCCCTTAGATCTCATC
TCTAAGGTCTTCGTCGTCGTCGTATGCTAGATCTACTCTTGCCCAGCTCGTTCAGATCTGTTAG
ATTTGTGTGGGATGCTCTAATTAATTACTACCAACTTAGTAGATCTGGAACTCTTTTGACTTGC
AGATCTTGCTCCACTCCTGTTGCATTTTGAATCTGTGTTGATGTGATTTAAGTTGTTGGCAGTG
CTTTTTGCATACTATTTGAATTTGTGGATGGTTAGCAGTCAGTACACTAGG
Conservation Information
Conserved circRNAs NA
PMCS 0.161708089
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2919
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017