Detail information of Os11g0703900_circ_g.3


General Information
CircRNA Name Os11g0703900_circ_g.3
ID in PlantcircBase osa_circ_010090
Alias Os_ciR3307
Organism Oryza sativa
Position chr11: 28804522-28806621  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os11g0703900
Parent gene annotation Heat shock protein 70. (Os11t0703900-01);Similar to Heat shock p
rotein 70. (Os11t0703900-02)
Parent gene strand +
Alternative splicing Os11g0703900_circ_g.1 Os11g0703900_circ_g.2 Os11g0703900_circ_g.4 Os11g0703900_circ_g.5 Os11g0703900_circ_g.6 Os11g0703900_circ_g.7 Os11g0703900_circ_g.8 Os11g0703900_circ_g.9 Os11g0703900_circ_g.10 Os11g0703900_circ_g.11 Os11g0703900_circ_g.12 Os11g0703900_circ_g.13
Support reads 3
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os11t0703900-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCAAGGTGATTGCTGGACCTGGTGACAAGCCTATGATTGTTGTCCAGTACAAGGGTGAGGAG
AAGCAGTTTGCTGCAGAAGAGATCTCCTCCATGGTCcccatcaacaccgtctttggtaactact
tattccctgctcctcagtcctctctctttctctctctccccccttagatctcatctctaaggtc
ttcgtcgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCATCAACACCGTCTTTGGTAACTACTTATTCCCTGCTCCTCAGTCCTCTCTCTTTCTCTCTC
TCCCCCCTTAGATCTCATCTCTAAGGTCTTCGTCGTCGTCGTATGCTAGATCTACTCTTGCCCA
GCTCGTTCAGATCTGTTAGATTTGTGTGGGATGCTCTAATTAATTACTACCAACTTAGTAGATC
TGGAACTCTTTTGACTTGCAGATCTTGCTCCACTCCTGTTGCATTTTGAATCTGTGTTGATGTG
ATTTAAGTTGTTGGCAGTGCTTTTTGCATACTATTTGAATTTGTGGATGGTTAGCAGTCAGTAC
ACTAGGATTTATTACTGGATCTGGACAGATATGCTCGTTTCAATCGGCTCGATTTGCTATGTTG
ATAGCTAACATGTTGTGCTTGTCCTACTGCCCTGGCGCAAATTTGATCCATGCATTCTTTTCGT
TAAATGATTTGTCAAGTAGTAATGCTTGTTTGAAAATGATATTATTATTATTATTATTATTTTA
AATAAATATAGCCTGAAACATTCTTAGTTTCGAGGAGAAGTGATGATGTCTTATCCATACCACA
TGTCTGCATCTCATATGATGATTAATCTACATCATGCACTACCATCTGATCTCCTCTAGCTCAT
ACAGCTTTTAACAAGTTAGGCGATAGATGTTTGCTACAAACAGTCAACTGGATTTGCTTTCTTG
AAAGAAAAAAAATGAACCGTGTAGTTTGCAACCTGTGATGTAAATTAACCCATTTACTGAACTA
CATTGATTATTTCAGTAAAATCACCATCTTTCGGCTGAGGTTGCATGCTTAGTTATTATATTTT
TACCAATGATGATTTTGTTATGTAGCCAGATACTGTACTTTCTTATGCCATTTGGTATCTGACT
CATTGTCTACTTTTGTGACTATGTGTCTCGAAATATGGCATATAATAAGGGGGAACGGATCTTG
CGACATTGATGGCTCCTGTATGAGCCTCCAATTACTATATAGCCGTTTACATGTTCTTATCATG
TTACTTTTCCAAATTAGTGCTGCACATCTTGTCTGTTTGCAAGTTTGGGTTCATTCATATTGCT
GTGGGCATTTTAATACATCTTAACTATAATGTAAATTTCTTGTACATCGCTAAAATTTTCTGCC
TTGATTGAGTAGACTCTTAGATGACATCTATCTTACCTTATGCACTTGATTCGTATTTCTGTTA
CAACATTTTGATTACTTGATGTAGTTCACACAAGCATGACACATCTCTTTGAAAAAAAGATTTC
ATTTTTTAAAGCAAGCCTAATGCTTTAGGGTGGGAGAAGTGATGATACTTAATCCATACAACAT
TTCTGCATCTCAGATGATGATCAATCTACATCATGCACTACCATCTGATCTCCCCATCATACAA
TTTTTTATTTTGTTTTGTTGGATTATATAACTTTAACATTTGATAAAGTGCCAACAGATTTTTA
TACACAATTTCTTATAGATATTACCATGACAGCTTGCAGCCTGTGATGCAAAAGTACCCATTAA
ACTGAATTACACTGATTATTCCAAACAAATCACCATCTTTCGGCTGAGGTTGCTTGCTTGTTTA
AAATTATGAATGCTTCTTGCACAACCATTTAGGACTTTCGGTAGTTTGTAATGCCATTTGGTAT
CTGACACATGGTCTGCGCTTGTGACTATTTGTCTTGAAATATGGCATAAAACAAGGGGGAACGG
ATCTTGCGACATTGGTGGTTCCTCTATGATCCTCCAATTACTATATAGCTGTTTACAATTTGTT
AAGTTAGGAGCATACCTTTTGCTTTGTCATCAAAGTCTTGGTTCCTTTGTATTTCTAGTTCAGA
TTCATTTTTCTTCAGCTTTTGAAACATAAACTCAGTATATTTTTACTGTAATTGCTGACATTGA
GTCTTCTCTGCAGATGCCAAGCGTCTCATTGGCAGGAGGTTTAGCGATGCTTCTGTTCAGAGTG
ACATTAAGCTCTGGCCCTTCAAGGTGATTGCTGGACCTGGTGACAAGCCTATGATTGTTGTCCA
GTACAAGGGTGAGGAGAAGCAGTTTGCTGCAGAAGAGATCTCCTCCATGGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.266323599
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2919
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015