Detail information of Os11g0703900_circ_g.1


General Information
CircRNA Name Os11g0703900_circ_g.1
ID in PlantcircBase osa_circ_043497
Alias NA
Organism Oryza sativa
Position chr11: 28804265-28804365  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRI-long
Parent gene Os11g0703900
Parent gene annotation Heat shock protein 70. (Os11t0703900-01);Similar to Heat shock p
rotein 70. (Os11t0703900-02)
Parent gene strand +
Alternative splicing Os11g0703900_circ_g.2 Os11g0703900_circ_g.3 Os11g0703900_circ_g.4 Os11g0703900_circ_g.5 Os11g0703900_circ_g.6 Os11g0703900_circ_g.7 Os11g0703900_circ_g.8 Os11g0703900_circ_g.9 Os11g0703900_circ_g.10 Os11g0703900_circ_g.11 Os11g0703900_circ_g.12 Os11g0703900_circ_g.13
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os11t0703900-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCAGCATCCATGGCGGGCAAGGGCGAGGGTCCGGCCATCGGCATCGACtcttcctcctcccc
aaaccctagccgccgccgccggcgtactcgagagaaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 101
Transcript exons: 28804265-28804365
TCTTCCTCCTCCCCAAACCCTAGCCGCCGCCGCCGGCGTACTCGAGAGAAACATCAGCATCCAT
GGCGGGCAAGGGCGAGGGTCCGGCCATCGGCATCGAC

Genomic sequence TCTTCCTCCTCCCCAAACCCTAGCCGCCGCCGCCGGCGTACTCGAGAGAAACATCAGCATCCAT
GGCGGGCAAGGGCGAGGGTCCGGCCATCGGCATCGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.198125495
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study