Detail information of Os11g0703900_circ_g.9


General Information
CircRNA Name Os11g0703900_circ_g.9
ID in PlantcircBase osa_circ_010096
Alias Os11circ09817
Organism Oryza sativa
Position chr11: 28806480-28807043  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os11g0703900
Parent gene annotation Heat shock protein 70. (Os11t0703900-01);Similar to Heat shock p
rotein 70. (Os11t0703900-02)
Parent gene strand +
Alternative splicing Os11g0703900_circ_g.1 Os11g0703900_circ_g.2 Os11g0703900_circ_g.3 Os11g0703900_circ_g.4 Os11g0703900_circ_g.5 Os11g0703900_circ_g.6 Os11g0703900_circ_g.7 Os11g0703900_circ_g.8 Os11g0703900_circ_g.10 Os11g0703900_circ_g.11 Os11g0703900_circ_g.12 Os11g0703900_circ_g.13
Support reads 2
Tissues leaf and panicle
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os11t0703900-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGGTGAAGATTTTGACAATCGTATGGTCAACCACTTTGTGCAAGAATTCAAGAGGAAGAACAA
GAAGGATATCACTGGCAACCCCAGGGCTCTCAGGAGgtttagcgatgcttctgttcagagtgac
attaagctctggcccttcaaggtgattgctggacctggtgacaagcctatgattgttgtccagt
acaagggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTAGCGATGCTTCTGTTCAGAGTGACATTAAGCTCTGGCCCTTCAAGGTGATTGCTGGACCT
GGTGACAAGCCTATGATTGTTGTCCAGTACAAGGGTGAGGAGAAGCAGTTTGCTGCAGAAGAGA
TCTCCTCCATGGTCCTCATCAAGATGCGTGAGATTGCTGAGGCCTACCTTGGCACCACCATCAA
GAATGCCGTTGTCACTGTTCCTGCCTACTTCAATGACTCCCAGAGGCAGGCCACCAAGGATGCT
GGAGTGATTGCTGGTCTCAATGTCATGCGTATCATCAACGAGCCGACTGCTGCAGCTATTGCCT
ATGGTCTTGATAAGAAGGCCACCAGCGTTGGTGAGAAGAATGTCCTCATCTTTGACCTTGGAGG
TGGTACCTTTGATGTCTCCCTCCTTACCATTGAGGAGGGTATCTTTGAGGTCAAGGCCACAGCT
GGTGACACCCATCTTGGTGGTGAAGATTTTGACAATCGTATGGTCAACCACTTTGTGCAAGAAT
TCAAGAGGAAGAACAAGAAGGATATCACTGGCAACCCCAGGGCTCTCAGGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.952821247
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015