Detail information of BGIOSGA033127_circ_g.2


General Information
CircRNA Name BGIOSGA033127_circ_g.2
ID in PlantcircBase osi_circ_008509
Alias Chr10:19966826_19968722(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 16549258-16551151  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA033127
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033127_circ_g.1 BGIOSGA033127_circ_igg.1 BGIOSGA033127_circ_g.2 BGIOSGA033127_circ_g.3 BGIOSGA033127_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA033127-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCCCACAGGAGGACTTTAAGCCTGTCTTAAAAGAACTTCTGGCAACTCACCCTGGATTAGAGT
TCTTGCAAGGCACCCCTGAGTTTCAGGAGAGATATGggtgaactctttgattgaagatgcaaaa
gctggtgctacattgaatgttactgggagctctgctagcacaaatgctgcttcaagtggttctt
tgccatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGAACTCTTTGATTGAAGATGCAAAAGCTGGTGCTACATTGAATGTTACTGGGAGCTCTGCT
AGCACAAATGCTGCTTCAAGTGGTTCTTTGCCATCAATGTTTCCGGCTGGTAGTGCTCCTCCCC
TTTCTCCTAGAAGCACTTCTGGCTCCCCCCGTGTTATGAGGCGAGGATCTGGAGCTGGACCATC
ATCCTTGGGATCTCCACTAAAAGTAGTTAGTGAACCAGTGAGGGAGGTTATACCCCAGGTACTT
CTTATCTATTTTTGCAGTTAGTATTATTGTTGCGTTATTTCTGTTTGTCATCATTCGACCATAT
ATTTATTTCTAATACTTCTTTGCATGCTATATGTTTTCAGTTTTACTTCAAATATGGGCGCCCT
GCTCCAAAGATTTGAAGGAGCAATGCTTATCTAGAATAGATCACCTCTTTTTTGCGGGGAGGAC
TCCAGATTCGAGTTGATTGCTTTGAGGATTTCATTTCTTGATTTTACGCATTAAAAATACATTT
CTAAGTTTGAATATTATATTTCTCCATATCAGAATTTAGATCAGTCACAAAAGATATATGCAAA
CTTCCATCGTTCTTCTCCAGTGTTCTTTTCAAGAAGATCGATGCTGCAGGCTCTGGAACTGTCA
CAAGGTATATTGTTCATTTCAATATCTGTGTTGATGCAATATAATGGCATCATTGGCATGTGCT
AGAAGTTTATGGACCTTAGCTGTTAATCTGTTATCATGTTTGGAAGACACGATCAATATTTTGT
AGATGGACTGTTATGTTATAGCATAATTGTTCATTCCACAGGCTGTTCAAATTCTATACACTGC
TTCATGGTGAAGCAATATCTGTGTTGATTTTGTTCTATTTATGTGGTTCTTTGTACTTGGAACT
CAATCTGTTATACCTAGAAGTAAGGTATTCTTGGTTGGATCCTTCATTGCACAATTGGCTTTCT
GAATCTGTTAGCTCGTGCTACTTTTCACTTGTCCTGGCTTTTGCCAGGAAATACAACATTCCAG
ACTATTTTAAGATATTATAAATACCAGTTTTGATAACCATCCTTATGTGTTATTCTATGGACAT
GATATTTGATCCTTCATTAGTAACTCTTAATTTTTATGCCACTAGAATGTGCTTTGGCACCATG
TGTTTCTTATGTACCTCATTATATTTGCTTTGTAATTGTTTTTGTAACTGGACTAGATTATCAT
ATACCCTTAGCTTTAACGGTTGAATTTATTGATAACTACACATGAAGTGTTTCATATGTATTAT
TAAACAAATTTTGAACAATTTCATTTGTTTTTCTGGCTCATGCAGTCTAGCGGTGTTATGATAA
CTAGAGTTCTGATGTAAAATATCCCAGTTCACAAGTTTATCTCAGCCCCACTGCGCTGTTGAAG
TCCTGAAACTTGAATTTAAGTGTACTTCCCATACATGTAGATGATTCCCCTTTGATGCATGTAG
ATGATTCCCCTTTGATCTTCATACTAAAATCTAATGTTTTCAGATTTGACATGGGTAAAGTATG
AATTTATTTATATATTCAGGGATGCGTTTGTTGATTACTGGATCAATGATAACAAGATTACAAT
GGACACAGCTAGCCAAATCTTTGAAATATTAAGAAAGCCGGATTACAATTATCTCACTCAGGTA
TGTAATTCTTGTGCTGGTTCTTTGTACCCTCACACCAGTATATTCGACTACAATTGGCAAAGAT
GTTCTTATATGTTGCTCATTTTCTTTGATGGGATCACTAGTTTGTAATTTCATTGATTTTGTGT
AATTCCCACAGGAGGACTTTAAGCCTGTCTTAAAAGAACTTCTGGCAACTCACCCTGGATTAGA
GTTCTTGCAAGGCACCCCTGAGTTTCAGGAGAGATATG
Conservation Information
Conserved circRNAs osa_circ_007099 zma_circ_000815
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021