Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d032708_circ_g.3 |
ID in PlantcircBase | zma_circ_000815 |
Alias | circ243 |
Organism | Zea mays |
Position | chr1: 235653997-235657077 JBrowse» |
Reference genome | AGPv4.38 |
Type | ui-circRNA |
Identification method | CIRI |
Parent gene | Zm00001d032708 |
Parent gene annotation |
Serine/threonine protein phosphatase 2A regulatory subunit B''al pha |
Parent gene strand | - |
Alternative splicing | Zm00001d032708_circ_g.1 Zm00001d032708_circ_g.2 Zm00001d032708_circ_g.4 |
Support reads | 3 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | CT-TA |
Number of exons covered | Zm00001d032708_T021:5 Zm00001d032708_T008:4 Zm00001d032708_T026:5 Zm00001d032708_T001:4 Zm00001d032708_T005:5 Zm00001d032708_T002:5 Zm00001d032708_T003:5 Zm00001d032708_T013:2 Zm00001d032708_T024:5 Zm00001d032708_T014:5 Zm00001d032708_T020:4 Zm00001d032708_T012:4 Zm00001d032708_T022:4 Zm00001d032708_T007:5 Zm00001d032708_T015:5 Zm00001d032708_T017:4 Zm00001d032708_T025:5 Zm00001d032708_T010:4 Zm00001d032708_T019:5 Zm00001d032708_T006:5 Zm00001d032708_T018:5 Zm00001d032708_T009:5 Zm00001d032708_T011:4 Zm00001d032708_T004:4 |
Conservation Information | |
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Conserved circRNAs | osi_circ_008509 osa_circ_007099 osi_circ_002852 |
PMCS | 0.009304352 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |