Detail information of Zm00001d032708_circ_g.3


General Information
CircRNA Name Zm00001d032708_circ_g.3
ID in PlantcircBase zma_circ_000815
Alias circ243
Organism Zea mays
Position chr1: 235653997-235657077  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRI
Parent gene Zm00001d032708
Parent gene annotation Serine/threonine protein phosphatase 2A regulatory subunit B''al
pha
Parent gene strand -
Alternative splicing Zm00001d032708_circ_g.1 Zm00001d032708_circ_g.2 Zm00001d032708_circ_g.4
Support reads 3
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d032708_T021:5
Zm00001d032708_T008:4
Zm00001d032708_T026:5
Zm00001d032708_T001:4
Zm00001d032708_T005:5
Zm00001d032708_T002:5
Zm00001d032708_T003:5
Zm00001d032708_T013:2
Zm00001d032708_T024:5
Zm00001d032708_T014:5
Zm00001d032708_T020:4
Zm00001d032708_T012:4
Zm00001d032708_T022:4
Zm00001d032708_T007:5
Zm00001d032708_T015:5
Zm00001d032708_T017:4
Zm00001d032708_T025:5
Zm00001d032708_T010:4
Zm00001d032708_T019:5
Zm00001d032708_T006:5
Zm00001d032708_T018:5
Zm00001d032708_T009:5
Zm00001d032708_T011:4
Zm00001d032708_T004:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGAAGGTAGAGAACTACTTGAAGCAGCATTTGTGCTAGCAGAGCTTCCAGCAACATTAAGCAC
AGCACCAGTCTTTGCATCATCAATCAAAGACTTCACccatatctctcctgaaactcgggggtcc
cttgtaaaaactctaagccagggtgtgttgccagtagttctttcaggacaggcttgaagtcatc
ctgtacat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCATATCTCTCCTGAAACTCGGGGGTCCCTTGTAAAAACTCTAAGCCAGGGTGTGTTGCCAGTA
GTTCTTTCAGGACAGGCTTGAAGTCATCCTGTACATGGAATATAACTTTTTTCCCATCAGTATG
AAAGAATTCAGAATGACAAAGCTAAAATCTATGCCCATGTTAGCACTGAAAAAATTCAGAAGGA
AATAACTGACCTGGGTGAGATATGTGTAACCTGGCTTTCTTAATATTTCAAATATTTGACTAGC
CATATCCATTGTAACCTTATTGTCGTTAATCCAGTACTCAACAAATGCATCCCTGTGTTTAGAT
AGAGTTAGACTACCTGCTTAAATCTGATATGGAATATCAACGCTCTTCAGAACAATCAGTGTTA
GAGGTAAACAGACTGCAATTTTACATATAAAATCATTAATCACTAGTACAAATTACAATTTATC
ACATGTAAAGATGCAAGTTTGGTGAAAGGCGGGTCAGCCCAAAACCCACTCTTCCACACTGAAC
ACTATCACCATCTAATAGTGTTTCGCTTTTCTTGTTTTCTAGTATTTACCGACTAAATGAAGTA
GTGTGTGTCACTGGGTTCATTGACGCATTTGTTTCCCTAATTGTTCATACCAAATAAAACATTA
CTAAACAAAATCACATTCCCAGATAATAATTAAGAAACTATGAAACAACGCAGAAGTTGAGTGA
TGTCAAATTTTACCATCAAAGCTATAGTGCATGTTAGATCTGACACTGGTAGGGGAAAGGTAAG
CTAGAAGCTGTAACACTTCTCTTAATAAACAAATTCAGGAAATCATGAAGCCTGCAACACAAAA
GGTTCCAAACCAGTGGCTAAGGTAAAATCTAGCATTATAGGTATGAACAAAATCAAAGAAAAGC
TAGCAACAATGATTCAAGGAGGAAGTGGGATAACATAAACCACTTCTGCATGTATCGATGTTTT
TTGCAATGGCAACGTTGCTAGACCGTGTAATCAGTAACCTATATAATTCCTTTGAAGAACAATA
TACAGATCAATGCAGCTTTCAGCCAATAATGGAGAACCTAACACCTAGCCTTGAAATGACATGC
CCAAAAGTCCAGGCACTAGCCAAGCATGATATACACCACTAAAATTGTAAGGACTTGCATGAAC
AAAGATGAAACTAACTAATCAAAATGTATACTCCCTCCATTCCAAAATGTCAGGTGTTTTATTT
TCTCAAGTCAAAAGTCTCTAGCTTCGAAAATGTATGGAAAATATAATGCCCAAAAGGAAAAATT
ATAAAAGAAGGTCGTTTTAGCCCTCTCAACTATTCTTAAAATGCAAGTCAACCTTGAACTTTTG
TGCACCTTTTACCCTTTTCTTCCTTAATAAATGTCAATACTCTAACTAGGGATGAAAATGGGTA
TCCAAATAGTTAGAACAAATTTAATATTTCAAAATAGATTTTATGCTAATCTTTTCTTATGTTA
TCAAAATCAAATACATTATTATAAATAAGAATACAATTTTGCATAACTTTTTTATACATTATTT
GCTCCCTACAACAAAAAAGGTGAAAAAAATATATGTATCTGTATCCGAATTTTATATCTAGCAT
TTGAGAAGATATATGATAAATTTGAAGTTTACCTTTTATGAATCTTTACAAGTTCAATGCTGAA
AACAAGAATTTAAACTTGCATAGCCGTTTCTATATCCTATTTATTCACAATTAAAAAAAGACCA
AAAAATTGGTATCCGAATAAGTATCTGTTTTCATCCCTCTTTCCCAATGCAGAATAACGAAGGG
CAGCAAGGTCATTTGATCTACTTTCTTAATATGTGTGCACAAGTCTTAAACGCCATTTAGAATA
AGAGGGTTTAGCATCTACTATACCAAATAAATGCACTATCATGGTGGACTTAATGAAACTAAAT
AACAAAACTGATGTTGTAGATGTTGGTGTGTTTTTTCTATAAACTTGAACAGAGCAAAGTTTGA
CTTAGGTCAAACCAAAAAACACATTAAATTTTGGTGCTTTGTGAGTGGGGGAGCATACAAGATA
GCAACCTCATTATTGTCTTAATGGTCCTTTTAGTACTTAAACAGCCCATGGTTGATTAAAGAAC
CATGTGATGGCTTAAAGCTAATGGTCAACATGTGATATCCAACTAAAGTGCTGAAAACCAATGA
TAAGTTGTGGCAAAAGTTAAGAATAATGTTTGTCCACAAGTGGCAAAGGAAGTAAAAAGGCATA
AACACAATTCTGATCCTAATCAAGTAGAACTGGCATTTAGCAAGTTTACAAGCTTCAGGGAGGA
CACAGAAGAAACCAACACACTAAAGAATAAAGAACAAACTGAAACAGGATAAGGAGACACTAGG
CTGACATATAGAAGTAACTATAGTTCCTCAAATGGATTTTTCAATCATTACATGGGCATCACCA
TAGACCTTGGGTTCAGATGTCGAAATCATACCTTGAGACAGTTCTAGTGCATTCAACATCGATT
TTCTTGAAAAGGACACTAGACAAGAATGAAGGAAGTTTACATATGTCCTTCGTGACCGATCTGA
ATTCTGGTATGGACAAGTATATCAGCTTCAGAAGTCATTGCAATGGCAGAAATAAGATTTGAAA
CCATATTCACCTTGAACTTGAAGTCCCCCACCACCAAAAAATAGGTGATCTGTTCTTGATAAGC
ACTGCTCCTTCAAATCTTTTGTGGGAGGACGCCCATTCTTGAAGTAAAACTATAAAACATATTG
GTCCACGAAAATTTTCCGCTTAAACAATGACAGTAGCAACAAAAGCTTCAATAATGGTTACAAG
GACAGGTGCAAAATACCTGAGGTATAACTTCTCTTACTGGTTCACTAACTAATTTTAATGGAGA
GCCCAAGGATGATGGTCCAGCTCCAGATCCTCGTCTCATAACACGAGGGGAACCAGACGTGCTC
CTAGGAGAAAGTGGTGGAGCACTACCAGCAGGAAACATCGAAGGTAGAGAACTACTTGAAGCAG
CATTTGTGCTAGCAGAGCTTCCAGCAACATTAAGCACAGCACCAGTCTTTGCATCATCAATCAA
AGACTTCAC
Conservation Information
Conserved circRNAs osi_circ_008509 osa_circ_007099 osi_circ_002852
PMCS 0.009304352
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b