Detail information of BGIOSGA033127_circ_g.2


General Information
CircRNA Name BGIOSGA033127_circ_g.2
ID in PlantcircBase osi_circ_002852
Alias 10:16549259|16551151
Organism Oryza sativa ssp. indica
Position chr10: 16549259-16551151  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA033127
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033127_circ_g.1 BGIOSGA033127_circ_g.2 BGIOSGA033127_circ_igg.1 BGIOSGA033127_circ_g.3 BGIOSGA033127_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA033127-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCCCACAGGAGGACTTTAAGCCTGTCTTAAAAGAACTTCTGGCAACTCACCCTGGATTAGAGT
TCTTGCAAGGCACCCCTGAGTTTCAGGAGAGATATGgtgaactctttgattgaagatgcaaaag
ctggtgctacattgaatgttactgggagctctgctagcacaaatgctgcttcaagtggttcttt
gccatcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGAACTCTTTGATTGAAGATGCAAAAGCTGGTGCTACATTGAATGTTACTGGGAGCTCTGCTA
GCACAAATGCTGCTTCAAGTGGTTCTTTGCCATCAATGTTTCCGGCTGGTAGTGCTCCTCCCCT
TTCTCCTAGAAGCACTTCTGGCTCCCCCCGTGTTATGAGGCGAGGATCTGGAGCTGGACCATCA
TCCTTGGGATCTCCACTAAAAGTAGTTAGTGAACCAGTGAGGGAGGTTATACCCCAGGTACTTC
TTATCTATTTTTGCAGTTAGTATTATTGTTGCGTTATTTCTGTTTGTCATCATTCGACCATATA
TTTATTTCTAATACTTCTTTGCATGCTATATGTTTTCAGTTTTACTTCAAATATGGGCGCCCTG
CTCCAAAGATTTGAAGGAGCAATGCTTATCTAGAATAGATCACCTCTTTTTTGCGGGGAGGACT
CCAGATTCGAGTTGATTGCTTTGAGGATTTCATTTCTTGATTTTACGCATTAAAAATACATTTC
TAAGTTTGAATATTATATTTCTCCATATCAGAATTTAGATCAGTCACAAAAGATATATGCAAAC
TTCCATCGTTCTTCTCCAGTGTTCTTTTCAAGAAGATCGATGCTGCAGGCTCTGGAACTGTCAC
AAGGTATATTGTTCATTTCAATATCTGTGTTGATGCAATATAATGGCATCATTGGCATGTGCTA
GAAGTTTATGGACCTTAGCTGTTAATCTGTTATCATGTTTGGAAGACACGATCAATATTTTGTA
GATGGACTGTTATGTTATAGCATAATTGTTCATTCCACAGGCTGTTCAAATTCTATACACTGCT
TCATGGTGAAGCAATATCTGTGTTGATTTTGTTCTATTTATGTGGTTCTTTGTACTTGGAACTC
AATCTGTTATACCTAGAAGTAAGGTATTCTTGGTTGGATCCTTCATTGCACAATTGGCTTTCTG
AATCTGTTAGCTCGTGCTACTTTTCACTTGTCCTGGCTTTTGCCAGGAAATACAACATTCCAGA
CTATTTTAAGATATTATAAATACCAGTTTTGATAACCATCCTTATGTGTTATTCTATGGACATG
ATATTTGATCCTTCATTAGTAACTCTTAATTTTTATGCCACTAGAATGTGCTTTGGCACCATGT
GTTTCTTATGTACCTCATTATATTTGCTTTGTAATTGTTTTTGTAACTGGACTAGATTATCATA
TACCCTTAGCTTTAACGGTTGAATTTATTGATAACTACACATGAAGTGTTTCATATGTATTATT
AAACAAATTTTGAACAATTTCATTTGTTTTTCTGGCTCATGCAGTCTAGCGGTGTTATGATAAC
TAGAGTTCTGATGTAAAATATCCCAGTTCACAAGTTTATCTCAGCCCCACTGCGCTGTTGAAGT
CCTGAAACTTGAATTTAAGTGTACTTCCCATACATGTAGATGATTCCCCTTTGATGCATGTAGA
TGATTCCCCTTTGATCTTCATACTAAAATCTAATGTTTTCAGATTTGACATGGGTAAAGTATGA
ATTTATTTATATATTCAGGGATGCGTTTGTTGATTACTGGATCAATGATAACAAGATTACAATG
GACACAGCTAGCCAAATCTTTGAAATATTAAGAAAGCCGGATTACAATTATCTCACTCAGGTAT
GTAATTCTTGTGCTGGTTCTTTGTACCCTCACACCAGTATATTCGACTACAATTGGCAAAGATG
TTCTTATATGTTGCTCATTTTCTTTGATGGGATCACTAGTTTGTAATTTCATTGATTTTGTGTA
ATTCCCACAGGAGGACTTTAAGCCTGTCTTAAAAGAACTTCTGGCAACTCACCCTGGATTAGAG
TTCTTGCAAGGCACCCCTGAGTTTCAGGAGAGATATG
Conservation Information
Conserved circRNAs osa_circ_007099* zma_circ_000815
PMCS
Functional Information
Coding potential Y
Potential coding position 16549359-16549272(+)
16551150-16549272(+)
Potential amino acid sequence MFPAEFRSVTKDICKLPSFFSSVLFKKIDAAGSGTVTRDAFVDYWINDNKITMDTASQIFEILR
KPDYNYLTQEDFKPVLKELLATHPGLEFLQGTPEFQERYGELFD*(+)
MVNSLIEDAKAGATLNVTGSSASTNAASSGSLPSMFPAEFRSVTKDICKLPSFFSSVLFKKIDA
AGSGTVTRDAFVDYWINDNKITMDTASQIFEILRKPDYNYLTQEDFKPVLKELLATHPGLEFLQ
GTPEFQERYGELFD*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021