Detail information of BGIOSGA033127_circ_g.4


General Information
CircRNA Name BGIOSGA033127_circ_g.4
ID in PlantcircBase osi_circ_008511
Alias Chr10:19514622_19515413(MH63RS2), Chr10:19968383_19969174(ZS97RS2), Chr10:19514622_19515413(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 16550812-16551603  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA033127
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033127_circ_g.1 BGIOSGA033127_circ_g.2 BGIOSGA033127_circ_igg.1 BGIOSGA033127_circ_g.2 BGIOSGA033127_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA033127-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGGAAATGGCCATCTTACCCTCAGAGAGCTAAAACGTGGGAATTTAATTGCTGCGATGCAGCA
GCTGGATGAGGAAGAGGATATCAATAAAGTGTTGAGgggatgcgtttgttgattactggatcaa
tgataacaagattacaatggacacagctagccaaatctttgaaatattaagaaagccggattac
aattatct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGATGCGTTTGTTGATTACTGGATCAATGATAACAAGATTACAATGGACACAGCTAGCCAAAT
CTTTGAAATATTAAGAAAGCCGGATTACAATTATCTCACTCAGGTATGTAATTCTTGTGCTGGT
TCTTTGTACCCTCACACCAGTATATTCGACTACAATTGGCAAAGATGTTCTTATATGTTGCTCA
TTTTCTTTGATGGGATCACTAGTTTGTAATTTCATTGATTTTGTGTAATTCCCACAGGAGGACT
TTAAGCCTGTCTTAAAAGAACTTCTGGCAACTCACCCTGGATTAGAGTTCTTGCAAGGCACCCC
TGAGTTTCAGGAGAGATATGGTACTTTCTGCCATCCAGTAGCAATGTTGTTGTGTATCTCTCGT
TCATTTTGGTGACAATCAAAATACTGATTTTCTTCTCATATAGTGATGTATGACACTGAATTTT
TTTAGTAGTGTATGGTGAATGTTGATATGTAAAAATATAAGCTTGTGTGTGTTCTAACTAGAGA
TTGCCATAGTAAAAAACAACTAGCTATTGATTATTTTATGAGGATTCTACGATTGGACCTGGTC
AATGACTATTGGTAGTGATTTGCTGGATGCCTGCATCTCATTCATCTGCTAATCGTTTATTATG
TAATTTTCAGCTGAGACTGTAATATACAGAATCTTTTATTCCATAAATAGAGCTGGAAATGGCC
ATCTTACCCTCAGAGAGCTAAAACGTGGGAATTTAATTGCTGCGATGCAGCAGCTGGATGAGGA
AGAGGATATCAATAAAGTGTTGAG
Conservation Information
Conserved circRNAs osa_circ_007104
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021