Detail information of Os02g0146700_circ_g.5


General Information
CircRNA Name Os02g0146700_circ_g.5
ID in PlantcircBase osa_circ_013127
Alias Os_ciR7939
Organism Oryza sativa
Position chr2: 2566842-2568337  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os02g0146700
Parent gene annotation Similar to predicted protein. (Os02t0146700-01);Similar to PSMD2
subunit (Fragment). (Os02t0146700-02)
Parent gene strand +
Alternative splicing Os02g0141300_circ_g.1 Os02g0141300_circ_igg.1 Os02g0141300_circ_g.2 Os02g0141300_circ_g.3 Os02g0141300_circ_g.4 Os02g0141300_circ_g.5 Os02g0141300_circ_g.6 Os02g0141300_circ_g.7 Os02g0142250_circ_ag.1 Os02g0142300_circ_g.1 Os02g0142450_circ_g.1 Os02g0142450_circ_g.2 Os02g0142450_circ_g.3 Os02g0142500_circ_igg.1 Os02g0142500_circ_ag.1 Os02g0142500_circ_ag.2 Os02g0143100_circ_g.1 Os02g0143100_circ_g.2 Os02g0143100_circ_g.3 Os02g0143100_circ_g.4 Os02g0143100_circ_g.5 Os02g0143100_circ_g.6 Os02g0143100_circ_g.7 Os02g0143200_circ_g.1 Os02g0143200_circ_g.2 Os02g0145000_circ_g.1 EPlOSAG00000039494_circ_ig.1 EPlOSAG00000039494_circ_ig.2 ENSRNA049472287_circ_ig.1 Os02g0146500_circ_g.1 Os02g0146500_circ_g.2 Os02g0146600_circ_g.1 Os02g0146600_circ_g.2 Os02g0146600_circ_g.3 Os02g0146700_circ_g.1 Os02g0146700_circ_g.2 Os02g0146700_circ_g.3 Os02g0146700_circ_g.4 Os02g0146900_circ_g.1 Os02g0147100_circ_ag.1 Os02g0147100_circ_ag.2 Os02g0147100_circ_ag.3 Os02g0147100_circ_ag.4 Os02g0147100_circ_ag.5 Os02g0147700_circ_igg.1 Os02g0147700_circ_igg.2
Support reads 2/1
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os02t0146700-02:7
Os02t0146700-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATCATATTTGCCTTGATGGAGCGCAGTGAGGCTGAGCTGGCAGAACCCATTATACGCCTGCTT
CCTGTTGCGCTTGGTCTTCTGTATCTTGGAAAGCAGtcaatgcagtatgtgaagcaggtctaca
ccgcaactgaggatcttcagctcaaaaagcagttctcattcatcattgcacgccatgtataaat
ctctcacg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 924
Transcript exons: 2566842-2566925,2567028-2567186,2567270-2567374,2567453-
2567557,2567663-2567803,2567922-2568026,2568113-2568337
TCAATGCAGTATGTGAAGCAGGTCTACACCGCAACTGAGGATCTTCAGCTCAAAAAGCAGTTCT
CATTCATCATTGCACGCCATGGTTTGGCCATGGAGATTGACGACGAGATAGCTGCCGATGGCAA
TGATAAGGAGGGTTTGCAAGAAATCGTTAATAATAGTAAGCTGAGTGAGGGGTACCTCACCCTT
GCTCGAGATATCGAAGTGATGGAAGCAAAATCTCCAGAGGATATATATAAGGTCCATTTAATTG
ATGGGCGTGGTGCCAGCTCCAGTCTTGATTCTGCAAGACAAAATTTAGCTGCAACATTTGTAAA
TGCATTCGTAAATGCTGGATTTGGTCAGGATAAGTTGATGACTGCTCCATCTGATTCTTCCAGT
AGCGGAGCTTCTGGAAACTGGTTATTCAAGAACAAGGAACATGGGAAAGCCAGCGCAGCAGCTA
GCCTGGGAATGATTCTCTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAGTACTTACA
TAGTAATGATGCTCATGTTGTTGCTGGAGCTTTGCTAGGTATTGGTATTGTCACATGTGGTGTG
AAGAATGATTGTGATCCAGCACTTGCTATTCTCATGGAGTACATTAACAAGGATGACACAAACA
TTCGGATTGGGGCAATCTTGGGTCTTGGTATTGCATATGCGGGTTCTCAGAAAGAGGAGCTTAA
ATCTTATCTATCAACTGTGTTGGGGGACTCTGAGAAATCAACTCTTGAGGTCCTGATATTCTCC
GCCATCGCTCTGGGATTGGTGTTTGTTGGTTCTTGCAATGAAGAGATTGCTCAATCTATCATAT
TTGCCTTGATGGAGCGCAGTGAGGCTGAGCTGGCAGAACCCATTATACGCCTGCTTCCTGTTGC
GCTTGGTCTTCTGTATCTTGGAAAGCAG

Genomic sequence TCAATGCAGTATGTGAAGCAGGTCTACACCGCAACTGAGGATCTTCAGCTCAAAAAGCAGTTCT
CATTCATCATTGCACGCCATGTATAAATCTCTCACGCACTATCTACCTTGGTTGCCACCTTTTG
CATCTTATGCTAAAAGTAGCAATCCCTTAAATTTGACCCAAGCGCTTCTCTTCTGCAGGGTTTG
GCCATGGAGATTGACGACGAGATAGCTGCCGATGGCAATGATAAGGAGGGTTTGCAAGAAATCG
TTAATAATAGTAAGCTGAGTGAGGGGTACCTCACCCTTGCTCGAGATATCGAAGTGATGGAAGC
AAAATCTCCAGAGGATATATATAAGGTCATCTATATTTTACTATCAATGTTTATTAAGGTTGCT
TTTTTCATTCATAATAATTAATATTTGTATTTAACAATCTACAGGTCCATTTAATTGATGGGCG
TGGTGCCAGCTCCAGTCTTGATTCTGCAAGACAAAATTTAGCTGCAACATTTGTAAATGCATTC
GTAAATGCTGGATTTGGTCAGGTTAGCTCTACAAACAATATGTTACTTTTAGTTCTTTCCGAGG
AAAGAATGAATCTCAAGACCATATCTTCTGTGCAGGATAAGTTGATGACTGCTCCATCTGATTC
TTCCAGTAGCGGAGCTTCTGGAAACTGGTTATTCAAGAACAAGGAACATGGGAAAGCCAGCGCA
GCAGCTAGCCTGGTAAGTTACATTGTTATTGATATTTGACAAACTCTACAAACCATTGACAACT
GAGTTCTTTAACTGGTCAACAATAATAACAAAAGTACTGTTTCACCTTTTCAGGGAATGATTCT
CTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAGTACTTACATAGTAATGATGCTCAT
GTTGTTGCTGGAGCTTTGCTAGGTATTGGTATTGTCACATGTGGTGTGAAGAATGATTGTGATC
CAGTATGTGCTCCACTGTCTAAGTTTCCCAACCTCCATCCTACTGATTAATATTGCAAATCTTT
TCTTAATACCCAAAATTTTGCAAATACTTTCTTTAATACCCTAAATTTGCTGCCAGGCACTTGC
TATTCTCATGGAGTACATTAACAAGGATGACACAAACATTCGGATTGGGGCAATCTTGGGTCTT
GGTATTGCATATGCGGGTTCTCAGAAAGAGGAGGTGGGATTTAAGAATTGTTATTCTGTGCTTT
TACAAAAAAAAACATTTTCTATATGTTCCACATAACCTGCTATCTGAAATTTCAGCTTAAATCT
TATCTATCAACTGTGTTGGGGGACTCTGAGAAATCAACTCTTGAGGTCCTGATATTCTCCGCCA
TCGCTCTGGGATTGGTGTTTGTTGGTTCTTGCAATGAAGAGATTGCTCAATCTATCATATTTGC
CTTGATGGAGCGCAGTGAGGCTGAGCTGGCAGAACCCATTATACGCCTGCTTCCTGTTGCGCTT
GGTCTTCTGTATCTTGGAAAGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.318491054
Functional Information
Coding potential Y
Potential coding position 2566846-2568334(+)
Potential amino acid sequence MQYVKQVYTATEDLQLKKQFSFIIARHGLAMEIDDEIAADGNDKEGLQEIVNNSKLSEGYLTLA
RDIEVMEAKSPEDIYKVHLIDGRGASSSLDSARQNLAATFVNAFVNAGFGQDKLMTAPSDSSSS
GASGNWLFKNKEHGKASAAASLGMILLWDTDSGLAQLDKYLHSNDAHVVAGALLGIGIVTCGVK
NDCDPALAILMEYINKDDTNIRIGAILGLGIAYAGSQKEELKSYLSTVLGDSEKSTLEVLIFSA
IALGLVFVGSCNEEIAQSIIFALMERSEAELAEPIIRLLPVALGLLYLGKQSMQYVKQVYTATE
DLQLKKQFSFIIARHGLAMEIDDEIAADGNDKEGLQEIVNNSKLSEGYLTLARDIEVMEAKSPE
DIYKVHLIDGRGASSSLDSARQNLAATFVNAFVNAGFGQDKLMTAPSDSSSSGASGNWLFKNKE
HGKASAAASLGMILLWDTDSGLAQLDKYLHSNDAHVVAGALLGIGIVTCGVKNDCDPALAILME
YINKDDTNIRIGAILGLGIAYAGSQKEELKSYLSTVLGDSEKSTLEVLIFSAIALGLVFVGSCN
EEIAQSIIFALMERSEAELAEPIIRLLPVALGLLYLGKQSMQYVKQVYTATEDLQLKKQFSFII
ARHGLAMEIDDEIAADGNDKEGLQEIVNNSKLSEGYLTLARDIEVMEAKSPEDIYKVHLIDGRG
ASSSLDSARQNLAATFVNAFVNAGFGQDKLMTAPSDSSSSGASGNWLFKNKEHGKASAAASLGM
ILLWDTDSGLAQLDKYLHSNDAHVVAGALLGIGIVTCGVKNDCDPALAILMEYINKDDTNIRIG
AILGLGIAYAGSQKEELKSYLSTVLGDSEKSTLEVLIFSAIALGLVFVGSCNEEIAQSIIFALM
ERSEAELAEPIIRLLPVALGLLYLGKQSMQYVKQVYTATEDLQLKKQFSFIIARHGLAMEIDDE
IAADGNDKEGLQEIVNNSKLSEGYLTLARDIEVMEAKSPEDIYKVHLIDGRGASSSLDSARQNL
AATFVNAFVNAGFGQDKLMTAPSDSSSSGASGNWLFKNKEHGKASAAASLGMILLWDTDSGLAQ
LDKYLHSNDAHVVAGALLGIGIVTCGVKNDCDPALAILMEYINKDDTNIRIGAILGLGIAYAGS
QKEELKSYLSTVLGDSEKSTLEVLIFSAIALGLVFVGSCNEEIAQSIIFALMERSEAELAEPII
RLLPVALGLLYLGKQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017