Detail information of Os02g0142450_circ_g.3


General Information
CircRNA Name Os02g0142450_circ_g.3
ID in PlantcircBase osa_circ_013103
Alias NA
Organism Oryza sativa
Position chr2: 2337989-2340419  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os02g0142450
Parent gene annotation Hypothetical gene. (Os02t0142450-01)
Parent gene strand -
Alternative splicing Os02g0141300_circ_g.1 Os02g0141300_circ_igg.1 Os02g0141300_circ_g.2 Os02g0141300_circ_g.3 Os02g0141300_circ_g.4 Os02g0141300_circ_g.5 Os02g0141300_circ_g.6 Os02g0141300_circ_g.7 Os02g0142250_circ_ag.1 Os02g0142300_circ_g.1 Os02g0142450_circ_g.1 Os02g0142450_circ_g.2 Os02g0142500_circ_igg.1 Os02g0142500_circ_ag.1 Os02g0142500_circ_ag.2 Os02g0143100_circ_g.1 Os02g0143100_circ_g.2 Os02g0143100_circ_g.3 Os02g0143100_circ_g.4 Os02g0143100_circ_g.5 Os02g0143100_circ_g.6 Os02g0143100_circ_g.7 Os02g0143200_circ_g.1 Os02g0143200_circ_g.2 Os02g0145000_circ_g.1 EPlOSAG00000039494_circ_ig.1 EPlOSAG00000039494_circ_ig.2 ENSRNA049472287_circ_ig.1 Os02g0146500_circ_g.1 Os02g0146500_circ_g.2 Os02g0146600_circ_g.1 Os02g0146600_circ_g.2 Os02g0146600_circ_g.3 Os02g0146700_circ_g.1 Os02g0146700_circ_g.2 Os02g0146700_circ_g.3 Os02g0146700_circ_g.4 Os02g0146700_circ_g.5 Os02g0146900_circ_g.1 Os02g0147100_circ_ag.1 Os02g0147100_circ_ag.2 Os02g0147100_circ_ag.3 Os02g0147100_circ_ag.4 Os02g0147100_circ_ag.5 Os02g0147700_circ_igg.1 Os02g0147700_circ_igg.2
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os02t0142450-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATGAGTGAAAATATTGCTGGAAATGCTGACTGTTTCTTGAGTTCCACAATTAATCTGGCAGCA
GTTCTTGTTCGCCATGGTCAATATGAAGCTGCTCAGggaagttcacagactgcaagttcgactg
cttatcattggaaaaagttttctgcacggtatctccacaattggtgctggaacaataggccata
tgggttac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAAGTTCACAGACTGCAAGTTCGACTGCTTATCATTGGAAAAAGTTTTCTGCACGGTATCTCC
ACAATTGGTGCTGGAACAATAGGCCATATGGGTTACTTCTTGATACTAACAGAGAAGTTTTTGG
TTTAATAAGAAAGGGTTCATTTTCTCTCTTCCGTTGTTTGGAGGGCATGGAGCAGTTTATTTAT
GGTTTGTTACCTTTTTCTAGTATTTAATAATTATATTAAAATTATTTTCAACTATCATTATGAG
CTATTCGGTAACGCCTATGAGCATTATACATCAGGTTCCTCTGATGACCTGCGCAATCTTGATA
TCCTTGGGGTGAACCCATCGGATAATATATCTCAGTCTGAAATCCTCATTGAAGTTCTAAGGTG
CATGGATCATATAAGCCATCTGCTGGGGAGATCTGCTGCTGCAATATATCATGAATCCCTCATC
AGTTCTGTTATATCACCTGATGAAATTGTTTCTCAGATCTTAAAGATTCTGGGCACTGGTTTCA
GTCCTCAGTCTCCCTCAGCCCTCATTACATTATTTGGAACAGATGCTTATGCAGAAAGAAGGCA
GACCGCTCACAAGAGTCAGAGGAAGTTTTCTGTTGAAATGTTACTATCTTTTCGTAAATTGCAA
TCAAAGTCGACATCCTGGTCAGCAGTATTTGATGTGATTGAGAACTTCATGAAGTATTTGAACA
CAAACGTGACCATCCAAGAGTATGAGCTGAAGAGAGTTTGCAATGTGAATACTGCGTTATTGGT
TCAAGCTACTTCACAGGTAGCAAGAACAATGTTCGAGTCCACTTTTGATCTATATCTGTTCCTC
AATTATCTGGTCTCCATTGGTGGGCAGGTATGCCATATTTTTGTATTTTGATATTTCTGTCTGA
TGTGCATGTGTTTACTTAACTCGGCCACTGTGCTACCTCTGATACGTACTGCTATATAGTTCAA
TATTATATTTCTTTTAGGGAAGTTCACAGACTGCTAGTTCGACTGCCATGCTATTACTCAAACT
TGCTCCGGTTGGTCAGAACTGGCTAGGACATCTGCAAATACTGATTAAGATGTTAAAGTGTTCT
TGACTTGCATCAATTGGAAGATAGTAGACATATAACCATAAGATCCTTGTCAGACCTTTGTGTT
GTTTGTGGTGTTAAACTGTAATTCAATGCTTCTTCATAGATACACACTATTCTTGACTGGTAAA
CGTCTTTCTTTTATCTGTTTCATTAATAAGAACAATGTCCAAATCAGGTCTCCTTGTCACAAAA
TGATATTGCCAGAATAAAACTGAAGTTGTTCCCAGTGATTCAAGATATACTGGGACAGTGGATT
GTCCTCCACTTTGTAGGAATTTCACCTACTACACCACCAACTATTGAGGATTTCAGCTATCAGC
TTTCTTCTCTCCAGCTAGGTCAGAACTTACAGTACATTTTGTTGCTCTCTTACTTTTACTTTTG
TTCTTTGATATGTATTCTCTTGAATGGGGACCCTTCCTCTACAGTATGTTTCCCGCTGTATTAT
GACAAGGCAACGAGTCCATACAGATAAAAACTGATATGCCAATGTTGGGAATAATTAACTATTT
GCCACTCTTACGAGTGGTTCTAAAGGATTTGCCACTGGACCCACATGTTGGTATGCTGTATTCA
ATAATGGCTTAAATGGAAAGTGGGTGCACATGATACTTGTCTCATTAGAGACTAAAATCACTAG
ATCAATTCATCTTCAATTGCTTAATTGCTAATGTATCATGTTACCCATTTCATGGGAATGGCTT
GACTTGACCCCTAAGAAACAATCTGTATCTCTAAGTTAGTTTGTTTCTAATATATGGAATGTAT
CTACATGGAGGAACTCAACTAAACAATGAAACTAATTATTATTTTTATCTCTTATTGCCAAGTA
ATAGCATGGCAGGAGGCCCATGGGAACAGTGCACTGCGGCCACAGGGTACTGTTCACACGAAAA
TTTTCTGCACTTGCCATGGGTCTGGGTGCACCACAAATGATTCTAAAATCTAAATGCAATGCAC
ACCTAGCCTCTTATGATATATGGGATCTTATATTCACACTTGGCTTAATATTTATAATGCCACT
TTCTTGTGCTTTTCTTGATAAAGAAAGAACACGTCCTCATTACTTCATTCTCACAGGAAAAGCT
GATGACCTGTCTTTGCACAGAAAGTTTGGCTGCTCTTATTTTACATTGGCTTGTTTACTTGATT
TTCCAAAATCTGCTGACGGGGATGTTCTCTCACCCTGGTTTCCTAATCCAACTGAGTTGGTCAA
CTTGGTAAGGAGGTTTAGTGGCTCAATTATGAGTGAAAATATTGCTGGAAATGCTGACTGTTTC
TTGAGTTCCACAATTAATCTGGCAGCAGTTCTTGTTCGCCATGGTCAATATGAAGCTGCTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.14616209
Functional Information
Coding potential Y
Potential coding position 2338164-2340416(+)
2340398-2338118(+)
2338081-2340372(-)
Potential amino acid sequence MEQFIYGSSDDLRNLDILGVNPSDNISQSEILIEVLRCMDHISHLLGRSAAAIYHESLISSVIS
PDEIVSQILKILGTGFSPQSPSALITLFGTDAYAERRQTAHKSQRKFSVEMLLSFRKLQSKSTS
WSAVFDVIENFMKYLNTNVTIQEYELKRVCNVNTALLVQATSQVARTMFESTFDLYLFLNYLVS
IGGQVSLSQNDIARIKLKLFPVIQDILGQWIVLHFVGISPTTPPTIEDFSYQLSSLQLGKADDL
SLHRKFGCSYFTLACLLDFPKSADGDVLSPWFPNPTELVNLVRRFSGSIMSENIAGNADCFLSS
TINLAAVLVRHGQYEAAQGSSQTASSTAYHWKKFSARYLHNWCWNNRPYGLLLDTNREVFGLIR
KGSFSLFRCLEGMEQFIYGSSDDLRNLDILGVNPSDNISQSEILIEVLRCMDHISHLLGRSAAA
IYHESLISSVISPDEIVSQILKILGTGFSPQSPSALITLFGTDAYAERRQTAHKSQRKFSVEML
LSFRKLQSKSTSWSAVFDVIENFMKYLNTNVTIQEYELKRVCNVNTALLVQATSQVARTMFEST
FDLYLFLNYLVSIGGQVSLSQNDIARIKLKLFPVIQDILGQWIVLHFVGISPTTPPTIEDFSYQ
LSSLQLGKADDLSLHRKFGCSYFTLACLLDFPKSADGDVLSPWFPNPTELVNLVRRFSGSIMSE
NIAGNADCFLSSTINLAAVLVRHGQYEAAQGSSQTASSTAYHWKKFSARYLHNWCWNNRPYGLL
LDTNREVFGLIRKGSFSLFRCLEGMEQFIYGSSDDLRNLDILGVNPSDNISQSEILIEVLRCMD
HISHLLGRSAAAIYHESLISSVISPDEIVSQILKILGTGFSPQSPSALITLFGTDAYAERRQTA
HKSQRKFSVEMLLSFRKLQSKSTSWSAVFDVIENFMKYLNTNVTIQEYELKRVCNVNTALLVQA
TSQVARTMFESTFDLYLFLNYLVSIGGQVSLSQNDIARIKLKLFPVIQDILGQWIVLHFVGISP
TTPPTIEDFSYQLSSLQLGKADDLSLHRKFGCSYFTLACLLDFPKSADGDVLSPWFPNPTELVN
LVRRFSGSIMSENIAGNADCFLSSTINLAAVLVRHGQYEAAQGSSQTASSTAYHWKKFSARYLH
NWCWNNRPYGLLLDTNREVFGLIRKGSFSLFRCLEGMEQFIYGSSDDLRNLDILGVNPSDNISQ
SEILIEVLRCMDHISHLLGRSAAAIYHESLISSVISPDEIVSQILKILGTGFSPQSPSALITLF
GTDAYAERRQTAHKSQRKFSVEMLLSFRKLQSKSTSWSAVFDVIENFMKYLNTNVTIQEYELKR
VCNVNTALLVQATSQVARTMFESTFDLYLFLNYLVSIGGQVSLSQNDIARIKLKLFPVIQDILG
QWIVLHFVGISPTTPPTIEDFSYQLSSLQLGKADDLSLHRKFGCSYFTLACLLDFPKSADGDVL
SPWFPNPTELVNLVRRFSGSIMSENIAGNADCFLSSTINLAAVLVRHGQYEAAQ(+)
MVNMKLLREVHRLQVRLLIIGKSFLHGISTIGAGTIGHMGYFLILTEKFLV*(+)
MAYCSSTNCGDTVQKTFSNDKQSNLQSVNFPEQLHIDHGEQELLPD*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017