Detail information of BGIOSGA031532_circ_g.4


General Information
CircRNA Name BGIOSGA031532_circ_g.4
ID in PlantcircBase osi_circ_008615
Alias Chr10:22038086_22038701(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 19165672-19166268  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA031532
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031532_circ_g.1 BGIOSGA031532_circ_g.2 BGIOSGA031532_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   NN-CC
Number of exons covered BGIOSGA031532-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTCCATCATGACGAGGAGTAGCGATACAGAATGGCAAAATGTGAAATAATATACCTGAAAAA
CTACACCAAATGAACCAGTACCAACTACACGTTCTGgtagattttgaggtttaatatctcgatg
ccagacaccaacaacacgatggatatatgcaagggcacggcaaatctatgaaaaatagtaaaac
acattagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAGATTTTGAGGTTTAATATCTCGATGCCAGACACCAACAACACGATGGATATATGCAAGGGC
ACGGCAAATCTATGAAAAATAGTAAAACACATTAGGACCAATAATTTCTTTAGAATCATGGATT
TAACAGTTTGAAATGATCTACAAAGCTAAAAGTATAACTTATACAGACCTGATATGCATACAGC
TTAACATGCAATATGGGCACACGCTGGTTCATCCGATTGTAGTATTTAGCAACACGATAAACTG
TCTCTGAGACATATTCAAGTACAAGGTTGAGGTAAACTTCACCCCTCTCAGTCGTCGAAAAGAA
GTGATGCTTTAGCTGGACCACATTAGGATGGTCAAGCAGTTGCATTGTTTGGAGCTCTCTGTTC
TTATATCTTTTATCTTGCAGAACCTTCTTAATGGCAACAGTCTCTCCAGTTTCCAAGCACTTGG
CCTGTTTGTATCAATAACTGGTCAATAACTTTATGCCCAAATATTGTAAATTTCCATCATGACG
AGGAGTAGCGATACAGAATGGCAAAATGTGAAATAATATACCTGAAAAACTACACCAAATGAAC
CAGTACCAACTACACGTTCTG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021