Detail information of Os02g0141300_circ_g.1


General Information
CircRNA Name Os02g0141300_circ_g.1
ID in PlantcircBase osa_circ_013091
Alias NA
Organism Oryza sativa
Position chr2: 2232293-2234091  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os02g0141300
Parent gene annotation Arabinokinase-Like Protein, Pollen development (Os02t0141300-01)
Parent gene strand -
Alternative splicing Os02g0141300_circ_igg.1 Os02g0141300_circ_g.2 Os02g0141300_circ_g.3 Os02g0141300_circ_g.4 Os02g0141300_circ_g.5 Os02g0141300_circ_g.6 Os02g0141300_circ_g.7 Os02g0142250_circ_ag.1 Os02g0142300_circ_g.1 Os02g0142450_circ_g.1 Os02g0142450_circ_g.2 Os02g0142450_circ_g.3 Os02g0142500_circ_igg.1 Os02g0142500_circ_ag.1 Os02g0142500_circ_ag.2 Os02g0143100_circ_g.1 Os02g0143100_circ_g.2 Os02g0143100_circ_g.3 Os02g0143100_circ_g.4 Os02g0143100_circ_g.5 Os02g0143100_circ_g.6 Os02g0143100_circ_g.7 Os02g0143200_circ_g.1 Os02g0143200_circ_g.2 Os02g0145000_circ_g.1 EPlOSAG00000039494_circ_ig.1 EPlOSAG00000039494_circ_ig.2 ENSRNA049472287_circ_ig.1 Os02g0146500_circ_g.1 Os02g0146500_circ_g.2 Os02g0146600_circ_g.1 Os02g0146600_circ_g.2 Os02g0146600_circ_g.3 Os02g0146700_circ_g.1 Os02g0146700_circ_g.2 Os02g0146700_circ_g.3 Os02g0146700_circ_g.4 Os02g0146700_circ_g.5 Os02g0146900_circ_g.1 Os02g0147100_circ_ag.1 Os02g0147100_circ_ag.2 Os02g0147100_circ_ag.3 Os02g0147100_circ_ag.4 Os02g0147100_circ_ag.5 Os02g0147700_circ_igg.1 Os02g0147700_circ_igg.2
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0141300-01:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGCCTTATCATAGGATATTGGTTTGTCACCATCCATAAAATCAGACAGGTCCATATCAAAGGT
TGGTGCACGATTACTCAATTCAGAACCAAATGATACctcaactcggaagttctcgtatatagga
tgtctagtaggagccttcacacagtaagatcgttttgggtcaacagttgttactgcatcattat
gatctcca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 900
Transcript exons: 2232293-2232458,2232543-2232758,2232873-2232949,2233056-
2233151,2233237-2233280,2233435-2233522,2233805-2233886,
2233961-2234091
CTCAACTCGGAAGTTCTCGTATATAGGATGTCTAGTAGGAGCCTTCACACAGTAAGATCGTTTT
GGGTCAACAGTTGTTACTGCATCATTATGATCTCCATACTTCTCCAAAAATGCATCCCCGGTTA
TGATCTCTGGAATATCTCTCGCGTAAACAGCTTCATATCTATGAGGTGGTAGGTTGCATAAATA
CTCCAGCGACGCTTCAGATTTCAAAAGATCTACACCATGTTCTTCGTATTCATCAGAATTTGTG
TTGCCTGATTGAATAGGAGGACAGGAGGGTAATGATTCTGAAAGAAGATCAGATGCAGCACACT
TGATCATCTTGCGTCCCATGTAAGTGCCTACCCTTACAGAGCCATAATCAGTCCCACCAACACT
ATGTCGTATCCCAGAGTCAAGACCCCAAAATCGAATGTGAGTTGGAATGCTGACCAACTCTTTC
ACTTCTGCAGGCTGACAAATCATTGCAAGAAGTTTGTTAGCTTCTCCACAAGCAGATGTCATTT
GATCCATTACACCACAAGGTGCTCCAACAATGCGATTCTCAACCTTTTGGCAGAGTATGGCAAG
ATCCCGTGGAGGGATATTTAGACCATAGGCAGCAGCAATAGCAGACATACTGGCAACCTCCACT
GATGCAGAAGAGGAGACACCTTTACCTTCAGGAACTGATGAAGAAACCAGAATGCTCATGCTGT
CTGTGAAGACCACACCTAGCTCGGTCATCAACACAAGGATTGTTCCAGCAACATATGCAGCCCA
TTTTTGGGATGGGTCCTGAGAGAAATATTCTTTGGCCTTATCATAGGATATTGGTTTGTCACCA
TCCATAAAATCAGACAGGTCCATATCAAAGGTTGGTGCACGATTACTCAATTCAGAACCAAATG
ATAC

Genomic sequence CTCAACTCGGAAGTTCTCGTATATAGGATGTCTAGTAGGAGCCTTCACACAGTAAGATCGTTTT
GGGTCAACAGTTGTTACTGCATCATTATGATCTCCATACTTCTCCAAAAATGCATCCCCGGTTA
TGATCTCTGGAATATCTCTCGCGTAAACAGCTTCATATCTGAAATTTTGCCAAAGTCATAAAAC
CTGGCATACACTATGAAGGACCATATAAAATTTGCTGTCAATATCAAGGTAATGAGACCTATGA
GGTGGTAGGTTGCATAAATACTCCAGCGACGCTTCAGATTTCAAAAGATCTACACCATGTTCTT
CGTATTCATCAGAATTTGTGTTGCCTGATTGAATAGGAGGACAGGAGGGTAATGATTCTGAAAG
AAGATCAGATGCAGCACACTTGATCATCTTGCGTCCCATGTAAGTGCCTACCCTTACAGAGCCA
TAATCAGTCCCACCAACACTGCATGAACCAAAGAAGATTATGGTTAACTATGCATCCCAACAAT
AAAACCAAACCATGCATCCCAACAATAAAACCAATCTTGCAAAAGATATCAATATGGAAAGTAT
TTACCTATGTCGTATCCCAGAGTCAAGACCCCAAAATCGAATGTGAGTTGGAATGCTGACCAAC
TCTTTCACTTCTGCAGGCTGCAGCAAAATTTGATCAATTAATTATAGAGGAAATGCAAAGTTGG
ACTGAGGAATGACTGGGTCTGGTAGCTACTTCCTCCAAGAGCTGGGTACCCTTACTAACCTGAC
AAATCATTGCAAGAAGTTTGTTAGCTTCTCCACAAGCAGATGTCATTTGATCCATTACACCACA
AGGTGCTCCAACAATGCGATTCTCAACCTGCATAGTCACCAAAGAATGACTCTCTGCAATAGAA
GACCTACCACATTCTGAAGCTATATCCCTTCATTTATTAGTACTTTACCTTTTGGCAGAGTATG
GCAAGATCCCGTGGAGGGATATTTAGACCTGAAGCCAAGACAAGAACATGAATTGATGTCAACT
AGCACGCCCAGTTAAGTTAAATGTGCAACAGTGGTGGCTGCTGCAGAACTAGATATCCAACCAA
AAGAAAGAAAATAGTGGCATTATTACAACAAAGATGTTCAAGTCAATCGTTTACCATAGGCAGC
AGCAATAGCAGACATACTGGCAACCTCCACTGATGCAGAAGAGGAGACACCTTTACCTTCAGGA
ACTGATGAAGAAACCTGAGGATTCAAATAAAATTATCATGAATGACCAATACAAACATTCGAGT
TAGAACACTTGATTGATTAGAATGTGGAAGGAAACACTTGATTGATTAGAATGTGGAAGGAGAA
AGTGTGAAAGATGCTGTTTTCTTTTTGTGACTAATAAACAATATTCCTTTTGAGTTCTGAATAT
CTCTTTATCTCCCCAATATGAGAAAGGTGACAAACTGGACAAAGAGGTGGAATTTTACATATAT
TACTGCATTCTGATTGAAAACAGAAAGGATCAAAGCTTACCAGAATGCTCATGCTGTCTGTGAA
GACCACACCTAGCTCGGTCATCAACACAAGGATTGTTCCAGCAACATATGCAGCCCATCTGAAC
CAGAACCAAGAATGAATATGCATGACAAGTTATGATTTTTATAGAGTAAAACAAACGATCTTTC
TTACTTTTGGGATGGGTCCTGAGAGAAATATTCTTTGGCCTTATCATAGGATATTGGTTTGTCA
CCATCCATAAAATCAGACAGGTCCATATCAAAGGTTGGTGCACGATTACTCAATTCAGAACCAA
ATGATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.261806976
Functional Information
Coding potential Y
Potential coding position 2234048-2232295(-)
Potential amino acid sequence MDLSDFMDGDKPISYDKAKEYFSQDPSQKWAAYVAGTILVLMTELGVVFTDSMSILVSSSVPEG
KGVSSSASVEVASMSAIAAAYGLNIPPRDLAILCQKVENRIVGAPCGVMDQMTSACGEANKLLA
MICQPAEVKELVSIPTHIRFWGLDSGIRHSVGGTDYGSVRVGTYMGRKMIKCAASDLLSESLPS
CPPIQSGNTNSDEYEEHGVDLLKSEASLEYLCNLPPHRYEAVYARDIPEIITGDAFLEKYGDHN
DAVTTVDPKRSYCVKAPTRHPIYENFRVEVSFGSELSNRAPTFDMDLSDFMDGDKPISYDKAKE
YFSQDPSQKWAAYVAGTILVLMTELGVVFTDSMSILVSSSVPEGKGVSSSASVEVASMSAIAAA
YGLNIPPRDLAILCQKVENRIVGAPCGVMDQMTSACGEANKLLAMICQPAEVKELVSIPTHIRF
WGLDSGIRHSVGGTDYGSVRVGTYMGRKMIKCAASDLLSESLPSCPPIQSGNTNSDEYEEHGVD
LLKSEASLEYLCNLPPHRYEAVYARDIPEIITGDAFLEKYGDHNDAVTTVDPKRSYCVKAPTRH
PIYENFRVEVSFGSELSNRAPTFDMDLSDFMDGDKPISYDKAKEYFSQDPSQKWAAYVAGTILV
LMTELGVVFTDSMSILVSSSVPEGKGVSSSASVEVASMSAIAAAYGLNIPPRDLAILCQKVENR
IVGAPCGVMDQMTSACGEANKLLAMICQPAEVKELVSIPTHIRFWGLDSGIRHSVGGTDYGSVR
VGTYMGRKMIKCAASDLLSESLPSCPPIQSGNTNSDEYEEHGVDLLKSEASLEYLCNLPPHRYE
AVYARDIPEIITGDAFLEKYGDHNDAVTTVDPKRSYCVKAPTRHPIYENFRVEVSFGSELSNRA
PTFDMDLSDFMDGDKPISYDKAKEYFSQDPSQKWAAYVAGTILVLMTELGVVFTDSMSILVSSS
VPEGKGVSSSASVEVASMSAIAAAYGLNIPPRDLAILCQKVENRIVGAPCGVMDQMTSACGEAN
KLLAMICQPAEVKELVSIPTHIRFWGLDSGIRHSVGGTDYGSVRVGTYMGRKMIKCAASDLLSE
SLPSCPPIQSGNTNSDEYEEHGVDLLKSEASLEYLCNLPPHRYEAVYARDIPEIITGDAFLEKY
GDHNDAVTTVDPKRSYCVKAPTRHPIYENFRVE(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017