Detail information of Os03g0320100_circ_g.2


General Information
CircRNA Name Os03g0320100_circ_g.2
ID in PlantcircBase osa_circ_019536
Alias Os03circ13579/Os_ciR133
Organism Oryza sativa
Position chr3: 11550445-11551137  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder, SMALT, Segemehl, circseq_cup, find_circ
Parent gene Os03g0320100
Parent gene annotation Alpha-L-arabinofuranosidase, C-terminal domain containing protei
n. (Os03t0320100-01)
Parent gene strand -
Alternative splicing Os03g0320100_circ_g.1 Os03g0320100_circ_g.3 Os03g0320100_circ_igg.1 Os03g0320100_circ_igg.2 Os03g0320100_circ_g.3 Os03g0320100_circ_g.4 Os03g0320100_circ_igg.5
Support reads 8/671/23/38
Tissues leaf and panicle/root/root/shoot, root, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0320100-01:3
Experimental Information
Sanger sequencing for BSS   Yes
PCR primers for BSS    F: ATGGCATTCAGGAATTCGGG
R: GTGTTGCACCACTTGAGTCC
Sanger sequencing for FL    Yes
PCR primers for FL    F: CATAGTCTTCAACTCATGGCAGCAC
R: GAAGACTATGGCATCTGGACTAAAC
Sequences
Splice junction sequence   TAAAGTGTAGACAAAAGCTTGATTGGAGAAGTTGACAATTTACCCGCGATCGTTGTCATTTATG
AAGAGTGGAGCACAACTTGCCATCTCGACCACATCActtgtcaggctgttggaaagagttctca
tcccgcagccaaccagatgtaagcaccgtctttatggacccgaattcctgaatgccattctcta
gtccagct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 137
Transcript exons: 11550445-11550508,11551065-11551137
CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GAAGTTGACAATTTACCCGCGATCGTTGTCATTTATGAAGAGTGGAGCACAACTTGCCATCTCG
ACCACATCA

Transcript length: 167
Transcript exons: 11550445-11550560,11551087-11551137
CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GACCCGAATTCCTGAATGCCATTCTCTAGTCCAGCTACAGCTATATTAAGATTCGTTGTCATTT
ATGAAGAGTGGAGCACAACTTGCCATCTCGACCACATCA

Transcript length: 171
Transcript exons: 11550445-11550558,11551081-11551137
CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GACCCGAATTCCTGAATGCCATTCTCTAGTCCAGCTACAGCTATATTAAGCCGCGATCGTTGTC
ATTTATGAAGAGTGGAGCACAACTTGCCATCTCGACCACATCA

Transcript length: 172
Transcript exons: 11550445-11550559,11551081-11551137
CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GACCCGAATTCCTGAATGCCATTCTCTAGTCCAGCTACAGCTATATTAAGACCGCGATCGTTGT
CATTTATGAAGAGTGGAGCACAACTTGCCATCTCGACCACATCA

Transcript length: 174
Transcript exons: 11550445-11550559,11551079-11551137
CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GACCCGAATTCCTGAATGCCATTCTCTAGTCCAGCTACAGCTATATTAAGAACCCGCGATCGTT
GTCATTTATGAAGAGTGGAGCACAACTTGCCATCTCGACCACATCA

Transcript length: 187
Transcript exons: 11550445-11550575,11551082-11551137
CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GACCCGAATTCCTGAATGCCATTCTCTAGTCCAGCTACAGCTATATTAAGATTCACAGCTTTGT
TACCGCGATCGTTGTCATTTATGAAGAGTGGAGCACAACTTGCCATCTCGACCACATCA

Transcript length: 188
Transcript exons: 11550445-11550574,11551080-11551137
CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GACCCGAATTCCTGAATGCCATTCTCTAGTCCAGCTACAGCTATATTAAGATTCACAGCTTTGT
TACCCGCGATCGTTGTCATTTATGAAGAGTGGAGCACAACTTGCCATCTCGACCACATCA

Transcript length: 189
Transcript exons: 11550445-11550576,11551081-11551137
CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GACCCGAATTCCTGAATGCCATTCTCTAGTCCAGCTACAGCTATATTAAGATTCACAGCTTTGT
TACCCCGCGATCGTTGTCATTTATGAAGAGTGGAGCACAACTTGCCATCTCGACCACATCA

Transcript length: 191
Transcript exons: 11550445-11550576,11551079-11551137
CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GACCCGAATTCCTGAATGCCATTCTCTAGTCCAGCTACAGCTATATTAAGATTCACAGCTTTGT
TACCACCCGCGATCGTTGTCATTTATGAAGAGTGGAGCACAACTTGCCATCTCGACCACATCA

Transcript length: 191
Transcript exons: 11550445-11550580,11551083-11551137
CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GACCCGAATTCCTGAATGCCATTCTCTAGTCCAGCTACAGCTATATTAAGATTCACAGCTTTGT
TACCAAAAGCGATCGTTGTCATTTATGAAGAGTGGAGCACAACTTGCCATCTCGACCACATCA

Transcript length: 193
Transcript exons: 11550445-11550580,11551081-11551137
CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GACCCGAATTCCTGAATGCCATTCTCTAGTCCAGCTACAGCTATATTAAGATTCACAGCTTTGT
TACCAAAACCGCGATCGTTGTCATTTATGAAGAGTGGAGCACAACTTGCCATCTCGACCACATC
A

Transcript length: 194
Transcript exons: 11550445-11550581,11551081-11551137
CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GACCCGAATTCCTGAATGCCATTCTCTAGTCCAGCTACAGCTATATTAAGATTCACAGCTTTGT
TACCAAAATCCGCGATCGTTGTCATTTATGAAGAGTGGAGCACAACTTGCCATCTCGACCACAT
CA

Transcript length: 195
Transcript exons: 11550445-11550580,11551079-11551137
CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GACCCGAATTCCTGAATGCCATTCTCTAGTCCAGCTACAGCTATATTAAGATTCACAGCTTTGT
TACCAAAAACCCGCGATCGTTGTCATTTATGAAGAGTGGAGCACAACTTGCCATCTCGACCACA
TCA

Transcript length: 198
Transcript exons: 11550445-11550585,11551081-11551137
CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GACCCGAATTCCTGAATGCCATTCTCTAGTCCAGCTACAGCTATATTAAGATTCACAGCTTTGT
TACCAAAATTGACCCGCGATCGTTGTCATTTATGAAGAGTGGAGCACAACTTGCCATCTCGACC
ACATCA

Transcript length: 199
Transcript exons: 11550445-11550585,11551080-11551137
CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GACCCGAATTCCTGAATGCCATTCTCTAGTCCAGCTACAGCTATATTAAGATTCACAGCTTTGT
TACCAAAATTGACCCCGCGATCGTTGTCATTTATGAAGAGTGGAGCACAACTTGCCATCTCGAC
CACATCA

Transcript length: 199
Transcript exons: 11550445-11550586,11551081-11551137
CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GACCCGAATTCCTGAATGCCATTCTCTAGTCCAGCTACAGCTATATTAAGATTCACAGCTTTGT
TACCAAAATTGACACCGCGATCGTTGTCATTTATGAAGAGTGGAGCACAACTTGCCATCTCGAC
CACATCA

Transcript length: 201
Transcript exons: 11550445-11550537,11551030-11551137
CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GACCCGAATTCCTGAATGCCATTCTCTAGGAGGAGATTAAAGTGTAGACAAAAGCTTGATTGGA
GAAGTTGACAATTTACCCGCGATCGTTGTCATTTATGAAGAGTGGAGCACAACTTGCCATCTCG
ACCACATCA

Transcript length: 201
Transcript exons: 11550445-11550590,11551083-11551137
CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GACCCGAATTCCTGAATGCCATTCTCTAGTCCAGCTACAGCTATATTAAGATTCACAGCTTTGT
TACCAAAATTGACAACCTGCGATCGTTGTCATTTATGAAGAGTGGAGCACAACTTGCCATCTCG
ACCACATCA

Transcript length: 204
Transcript exons: 11550445-11550591,11551081-11551137
CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GACCCGAATTCCTGAATGCCATTCTCTAGTCCAGCTACAGCTATATTAAGATTCACAGCTTTGT
TACCAAAATTGACAACCTGCCGCGATCGTTGTCATTTATGAAGAGTGGAGCACAACTTGCCATC
TCGACCACATCA

Transcript length: 223
Transcript exons: 11550445-11550542,11551013-11551137
CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GACCCGAATTCCTGAATGCCATTCTCTAGTCCAGCAAATATGTAGCAGGGTGAGGAGATTAAAG
TGTAGACAAAAGCTTGATTGGAGAAGTTGACAATTTACCCGCGATCGTTGTCATTTATGAAGAG
TGGAGCACAACTTGCCATCTCGACCACATCA

Transcript length: 260
Transcript exons: 11550445-11550553,11550987-11551137
CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GACCCGAATTCCTGAATGCCATTCTCTAGTCCAGCTACAGCTATACCAAAATTCATCCTGTCTT
CAGTGGACAAATATGTAGCAGGGTGAGGAGATTAAAGTGTAGACAAAAGCTTGATTGGAGAAGT
TGACAATTTACCCGCGATCGTTGTCATTTATGAAGAGTGGAGCACAACTTGCCATCTCGACCAC
ATCA

Transcript length: 303
Transcript exons: 11550445-11550585,11550951-11551051,11551077-11551137
CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GACCCGAATTCCTGAATGCCATTCTCTAGTCCAGCTACAGCTATATTAAGATTCACAGCTTTGT
TACCAAAATTGACCCATTCTACAGTTTGCCTATGAAGTAGGTGGGTTATCCAAAATTCATCCTG
TCTTCAGTGGACAAATATGTAGCAGGGTGAGGAGATTAAAGTGTAGACAATTACCCGCGATCGT
TGTCATTTATGAAGAGTGGAGCACAACTTGCCATCTCGACCACATCA

Transcript length: 350
Transcript exons: 11550445-11550585,11550929-11551137
CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GACCCGAATTCCTGAATGCCATTCTCTAGTCCAGCTACAGCTATATTAAGATTCACAGCTTTGT
TACCAAAATTGACGTCTCTATCTCTAGAGATACTCCCATTCTACAGTTTGCCTATGAAGTAGGT
GGGTTATCCAAAATTCATCCTGTCTTCAGTGGACAAATATGTAGCAGGGTGAGGAGATTAAAGT
GTAGACAAAAGCTTGATTGGAGAAGTTGACAATTTACCCGCGATCGTTGTCATTTATGAAGAGT
GGAGCACAACTTGCCATCTCGACCACATCA

Transcript length: 400
Transcript exons: 11550445-11550588,11550668-11550866,11551081-11551137
CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GACCCGAATTCCTGAATGCCATTCTCTAGTCCAGCTACAGCTATATTAAGATTCACAGCTTTGT
TACCAAAATTGACAACCTTTATTTTCAAGTAAGTGTTTCCATCGTTAGAATTCTGCCAAGTGAG
AGCAGATGCGGCCAATTGATCATAGTTTGACACCTGAATTGTCAAGGGATGAAGTGTTGCACCA
CTTGAGTCCTTGAAGAAGTGTAGCATCCAGTAGTTTGGACATCCATAGTGCTGCCATGAGTTGA
AGACTATGGCATCTGGACTAAACCCGCGATCGTTGTCATTTATGAAGAGTGGAGCACAACTTGC
CATCTCGACCACATCA

Genomic sequence CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GACCCGAATTCCTGAATGCCATTCTCTAGTCCAGCTACAGCTATATTAAGATTCACAGCTTTGT
TACCAAAATTGACAACCTGCAAGAGAGAATTTCCTGGCCGGTTATTTCAATTTCAGTTGTGTCA
GCGATGTTCCTTAGTGGGATAGTAAAAATACCTTTATTTTCAAGTAAGTGTTTCCATCGTTAGA
ATTCTGCCAAGTGAGAGCAGATGCGGCCAATTGATCATAGTTTGACACCTGAATTGTCAAGGGA
TGAAGTGTTGCACCACTTGAGTCCTTGAAGAAGTGTAGCATCCAGTAGTTTGGACATCCATAGT
GCTGCCATGAGTTGAAGACTATGGCATCTGGACTAAACCTATTCAACAGGGCATGCATCATTGG
TAAAAGAACAGTTTATCATGAAGAACTACTATATACGTCTCTATCTCTAGAGATACTCCCATTC
TACAGTTTGCCTATGAAGTAGGTGGGTTATCCAAAATTCATCCTGTCTTCAGTGGACAAATATG
TAGCAGGGTGAGGAGATTAAAGTGTAGACAAAAGCTTGATTGGAGAAGTTGACAATTTACCCGC
GATCGTTGTCATTTATGAAGAGTGGAGCACAACTTGCCATCTCGACCACATCA
Conservation Information
Conserved circRNAs osi_circ_004774* osi_circ_012930
PMCS 0.500204678
Functional Information
Coding potential Y
Potential coding position 11550850-11550534(+)
11550475-11551137(-)
Potential amino acid sequence MASGLNPRSLSFMKSGAQLAISTTSLVRLLERVLIPQPTRCKHRLYGPEFLNAIL*(+)
MRTLSNSLTSDVVEMASCAPLFINDNDRGFSPDAIVFNSWQHYGCPNYWMLHFFKDSSGATLHP
LTIQVSNYDQLAASALTWQNSNDGNTYLKIKVVNFGNKAVNLNIAVAGLENGIQEFGSIKTVLT
SGWLRDENSFQQPDK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA