Detail information of BGIOSGA010845_circ_g.2


General Information
CircRNA Name BGIOSGA010845_circ_g.2
ID in PlantcircBase osi_circ_004774
Alias 3:12878381|12879073
Organism Oryza sativa ssp. indica
Position chr3: 12878381-12879073  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA010845
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA010845_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA010845-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAAATGTAGACAAAAGCTTGATTGGAGAAGTTGACAATTTACCCGCGATCGTTGTCATTTACG
AAGAGTGGAGCACAACTTGCCATCTCGACCACATCActtgtcaggctgttggaaagagttctca
tcccgcagccaaccagatgtaagcaccgtctttatggacccgaattcctgaatgccattctcta
gtccagct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGTCAGGCTGTTGGAAAGAGTTCTCATCCCGCAGCCAACCAGATGTAAGCACCGTCTTTATG
GACCCGAATTCCTGAATGCCATTCTCTAGTCCAGCTACAGCTATATTAAGATTCACAGCTTTGT
TACCAAAATTGACAACCTGCAAGAGAGAATTTCCTGGCCGGTTATTTCAATTTCAGTTGTGTCA
GTGATGTTCCTTAGTGGGATAGTAAAAATACCTTTATTTTCAAGTAAGTGTTTCCATCGTTAGA
ATTCTGCCAAGTGAGAGCAGATGCGGCCAATTGATCATAGTTTGACACCTGAATTGTCAAGGGA
TGAAGTGTTGCACCACTTGAGTCCTTGAAGAAGTGTAGCATCCAGTAGTTTGGACATCCATAGT
GCTGCCACGAGTTGAAGACTATGGCATCTGGACTAAACCTATTCAACAGGGCATGCATCATTGG
TAAAACAACAGTTTATCATGAAGAACTACTATATACGTCTCTATCTCTAGAGATACTCCCATTC
TACAGTTTGCCTATGAAGTAGGTGGGTTATCCAAAATTCATCCTGTCTTCAGTGGACAAATATG
TAGCAGGGTGAGGAGATTAAAATGTAGACAAAAGCTTGATTGGAGAAGTTGACAATTTACCCGC
GATCGTTGTCATTTACGAAGAGTGGAGCACAACTTGCCATCTCGACCACATCA
Conservation Information
Conserved circRNAs osa_circ_019536* osa_circ_019535*
PMCS
Functional Information
Coding potential Y
Potential coding position 12878411-12879073(-)
12878786-12878470(+)
Potential amino acid sequence MRTLSNSLTSDVVEMASCAPLFVNDNDRGFSPDAIVFNSWQHYGCPNYWMLHFFKDSSGATLHP
LTIQVSNYDQLAASALTWQNSNDGNTYLKIKVVNFGNKAVNLNIAVAGLENGIQEFGSIKTVLT
SGWLRDENSFQQPDK*(-)
MASGLNPRSLSFTKSGAQLAISTTSLVRLLERVLIPQPTRCKHRLYGPEFLNAIL*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021