Plant Circular RNA Database

Detail information of 4_circ_ag.2

			
						 General Information
					
						CircRNA Name
						4_circ_ag.2
					
						ID in PlantcircBase
						ath_circ_033216
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr4: 13859005-13862821  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							4_circ_ag.11 4_circ_ag.12 4_circ_ag.13 AT4G27820_circ_g.1 AT4G27820_circ_g.3 AT4G27820_circ_g.4 4_circ_ag.5 4_circ_ag.6 AT4G27820_circ_g.7 4_circ_ag.8 AT4G27820_circ_g.9 4_circ_ag.10 4_circ_ag.11 4_circ_ag.12 4_circ_ag.13 AT4G27830_circ_g.1 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	4_circ_ag.2
ID in PlantcircBase	ath_circ_033216
Alias	NA
Organism	Arabidpsis thaliana
Position	chr4: 13859005-13862821 JBrowse»
Reference genome	TAIR10.38
Type	ag-circRNA
Identification method	CIRI
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	4_circ_ag.11 4_circ_ag.12 4_circ_ag.13 AT4G27820_circ_g.1 AT4G27820_circ_g.3 AT4G27820_circ_g.4 4_circ_ag.5 4_circ_ag.6 AT4G27820_circ_g.7 4_circ_ag.8 AT4G27820_circ_g.9 4_circ_ag.10 4_circ_ag.11 4_circ_ag.12 4_circ_ag.13 AT4G27830_circ_g.1
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAGTTGCTCTGACTCTTCCTCCGAAAACACCGGTAATCTCGATCCAACAGTTCTCTTCATTTCA
TCCGGATAGTCTCCAAATACCAAAGGCTTCAACATCcagccatataagaaagttttagctcttt
gagttgcgatttcatcatccttggagtttgtatatggagataacccgaatgcaaatatactaag
ccctatgg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CAGCCATATAAGAAAGTTTTAGCTCTTTGAGTTGCGATTTCATCATCCTTGGAGTTTGTATATG
GAGATAACCCGAATGCAAATATACTAAGCCCTATGGATCCTTTCTGCTTACTCTGCACCATCAT
AATGAACTACGATCATACGAGGTTCAGGTTTTAAGAGCAAAAAATGTGTGTATATACCTTGTAC
TTTAGTTTATACAACTTTGAAGCAGAGGCATGAGCTAGCAATATGTTATGGCCTGCAATATATG
GTTCTGTAGAAGAATTTCCAGTAGAACAATTGACGAATTTATTAGGAGAACAATGTCCAGGCGG
CGCGGTTCCTTGGTCATAAGAACCAATGGCGAAAATTGTAGCTTCGTTTATTGTAGTCCATAAC
TTCACATCCTCCCCAAACTCTCTGAAGCATACATCTGCATAAGCAGTGAAGTCTTCTCTGCAAT
ATAAAAAACAAACAACATTTTTTTACTTACAATTCATATAATTAAAAAATGACATTGTTAGAGC
AGAATCTTTTGTATCCTTTACATGATTTTGCGGTTGATCCATCCGCCGTACTCATCTTCAAGAG
ACTGAGGAAGATCATAGTGGTAAAGTGTAACATGTGGTTCGATTCCTGTTAATAGTTTTGCCAA
AAAATTATATTTAGAAGTTATGAATTGGCTATAGTTGCGATTATATATAAAGACCAAAACCTCA
CCATGGCTTTTTAGGTCTTTGATGAGATTGTTGTAAAACAATAGTCCTTTTGGATTAATGAGTC
CTCTTCCATCTGTCACAAAGACAACAAGAGTTTAAGAGGTCAGAAACAATAACATCGTTACTTG
CAAATAAAGAAACAAGGAAGAGGCGTAACTAGGTATAAGTCTTGACCAGGAGATAGAGAATCTG
AATGATTCTAAGCCCATTGTTGCCATCAGCTTAACATCTTCCTGCCAAAGTAACAACAACATTG
AATTTGAGAAAACAGAGTCAGAGACTTACGACAACTTAAAAGTAAAGGGCAAAGAAGAGAGAGA
GAGGAACCTTGTATTTGTGATACCCATCAGATGTTACATCTCCATTACCTGTATCGTCTGCAAG
TTTTGAAGAAGAATATATGAGAAATTTTCCAATATAAACCCTCTAATAATGACTCATAATTTGA
ACCGCAGAGTAGTAACCTATGATATGAACTACACAAAGATACATGAATCTTTAATAATCCCTAG
CCAGAACTTATGTTCTATTCGTAAATTGTTCACAAAAACAAAAACTCAAACAAAAACAAAAATA
TATTTACAAGAGTTGGAGAAAGTATCCCAGACACTAGGAGTTCTTCCATCTTCAGCAACAGCTC
CTTCCCACTATTTCCACAAATTCCCCAACATAGACAAAAGAAACTCGATTTTATAGACAACACA
ACTAAGATGAAGAACAGAGAAGCAGAGTCGAACCTGATAAGCAGAAGTGGCGGCTCCGAAGAGG
AAATCCTTTGGAAAACTGTTTCTGGTAAAGGCATCACTGTAGCTTGTTGCCAAGAGGATGACCA
GAAAAATGAAAAGTAGAGAGAAATGTTTCATTTTTATTTTGCGCCTTTCGTTTTAGTGTAGAGT
TTTGAAGATTTGGTTTTCAAGAAAAAATAATAATAAAAAATGAAGGTGTTTGGAGTTCTCTTGA
CCGTAGCAAAACTGCGCAAGTGATCGATCTTTTTCTCTATGTGACAAATATATATATGTGAAGA
AGAAAGATTCAAGAAATATCTCTTTTCGGTTTCCTTGTGATGTGACCGACATATATTTCCACTT
ATATTATGTACACTACAATCATAAATTTGTTCTCACATGTGGATGTGGTTCCATGCGAGGGGAG
CGACCAATCACTATAACTGATGATGTTAATTATTGGCCCAAATAGGCCCAAACATTTCATAACG
TAAGGCCTATACGTTTGACCCAACAACGACAAAATTTACAAAATTCTCGGCAAATTATGATTAT
TATAGGTTTCGGATTCATACGGCGTTTTATTCTTTATTCTAAAGTTGGGAAGCTCCTTTGGTAG
CTTGGATATCTTTTTTTTTCCTAATGAAGGGTAAGTCGCTTGGATATCTTGCGTTGTGAATTCA
AAATCATATTATAAAATTCATCTCTAATCTTTTCTAACATTAGTATGACGGATATACATCAAAG
TTACGTTTATTATAAGCTGATTCTGAGCGGTCTATCACTATAGCTTGTATTTTCTTTTCTGATA
AAAGATCTTCTATTTATCACTTATAGCTTGTTGTCAAAACTATGACCAGAAAAATGGAAAAAAG
AGACATAAGATTCATTTCCATTTTTCCTCCTTTAGTCTGAGTTCAAGAGAATATAATTAAAGGG
TTTTAGTGGTTTTCTTGGACCATTAAAAAGAAAAGTACATATCAAGTGACCGATCTTTTCTATT
CATTCTTCTTCCACTCACAAAACGCGACAAATATACATGTGAAGAAGGCAATAGAAATGTATCT
TCTTTTATTTTTCGGTGTAAGTGTAATCTTTGTGATGTGACTGACATAAATTTCCAATGCAACT
CTATCTCTATGTACTGGAAATTTAAGTTGTTAATGTCTTTGTGACTTTTGTGGTTGTGTTCGAA
TGCCGTTATCTAGTTTTTATCTTCAAGAATCTATGCAACATTTATTGGTCTCAAAAGTTACATC
TTTTTTTCTATGCAATTCTTATAAATTCATTTTGCCAAGTCACTGAGATTTTTCTTTGTATAGA
TGAAATAAACCAAATAAGGATCCTTTGGTTAAATATATTACAATGAAGAAGAGCCAGAGATGTT
GCTCTGCAACTGAATAGTATCTTGAGTAGCAACATCAATTGTACCATTGAGGAAACCAGTGTAC
CAAGAAGCAGAGAGCTTTGGAGTCCTCTTGCGACCAGGATCGCTGAAATTCACATAGTACATTC
CGAAGCTGGTCGTATATCCACTCAGTAACTCATACAAATCAATCATCGACCATACAAAGTAACC
TCTCGTGTCCGATCCATTCCTGATCAGTAAGTAAAACTGGAATTAGACCATGAATCATAATGTA
GTAATATGAGGACTAAAAGATGCAGAAGGAGAATCATACTTGATGGCATTGAGCATAGCACCAA
TGTAAGCTTGAATGAATTCAATTCTTTGTGTGTCTTGTAATGTCGAGTCGCGTCCCATCGGCAT
ACCTGTTTTTATATTTAAAAAATTGCAAGTTGAAGAATCTTAAAGAACAAGAAAGTGTGCTTTC
AAGCAGACACAACAGAGTAAGAAAACAAAAGAGAATGAAGTGTTGTACCATTTTCAAGAATATA
GATTGGAGGATTGTTATAGCTCTGCTTTATATACTCAAGAATACCTTCAAGACCCCATGGAGTA
GCCTCCCACTTCAAGAAAAACAATTGATTCAAGAAGAGCTTTTGGCAAAAAATATATATGTATT
ATGCAAATTTGCAGGACCTTACCAGAAGAAATGAAGAATTCGCAGCGGCTGTCCAAAGAAGAAG
AACTATTAGTTTTAAGAATTGATCAGAAGCATTTTTCTATTGGTTAATGATGAAAGAAAACTAA
TCTTACAAATCATATATACTCCCATGTCTTTAAAGAAGCCTTCATTCATGCTGGGAAAGATAGA
AGGTGAGGGTTTGTTTGTGACATAAAATGTCGTGTAGTGAATAATTCCTATAAAGTCAGATGAT
CCTTTAAGTTGCTCTGACTCTTCCTCCGAAAACACCGGTAATCTCGATCCAACAGTTCTCTTCA
TTTCATCCGGATAGTCTCCAAATACCAAAGGCTTCAACATC
						
					

			
		

Sequences
Splice junction sequence	AAGTTGCTCTGACTCTTCCTCCGAAAACACCGGTAATCTCGATCCAACAGTTCTCTTCATTTCA TCCGGATAGTCTCCAAATACCAAAGGCTTCAACATCcagccatataagaaagttttagctcttt gagttgcgatttcatcatccttggagtttgtatatggagataacccgaatgcaaatatactaag ccctatgg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CAGCCATATAAGAAAGTTTTAGCTCTTTGAGTTGCGATTTCATCATCCTTGGAGTTTGTATATG GAGATAACCCGAATGCAAATATACTAAGCCCTATGGATCCTTTCTGCTTACTCTGCACCATCAT AATGAACTACGATCATACGAGGTTCAGGTTTTAAGAGCAAAAAATGTGTGTATATACCTTGTAC TTTAGTTTATACAACTTTGAAGCAGAGGCATGAGCTAGCAATATGTTATGGCCTGCAATATATG GTTCTGTAGAAGAATTTCCAGTAGAACAATTGACGAATTTATTAGGAGAACAATGTCCAGGCGG CGCGGTTCCTTGGTCATAAGAACCAATGGCGAAAATTGTAGCTTCGTTTATTGTAGTCCATAAC TTCACATCCTCCCCAAACTCTCTGAAGCATACATCTGCATAAGCAGTGAAGTCTTCTCTGCAAT ATAAAAAACAAACAACATTTTTTTACTTACAATTCATATAATTAAAAAATGACATTGTTAGAGC AGAATCTTTTGTATCCTTTACATGATTTTGCGGTTGATCCATCCGCCGTACTCATCTTCAAGAG ACTGAGGAAGATCATAGTGGTAAAGTGTAACATGTGGTTCGATTCCTGTTAATAGTTTTGCCAA AAAATTATATTTAGAAGTTATGAATTGGCTATAGTTGCGATTATATATAAAGACCAAAACCTCA CCATGGCTTTTTAGGTCTTTGATGAGATTGTTGTAAAACAATAGTCCTTTTGGATTAATGAGTC CTCTTCCATCTGTCACAAAGACAACAAGAGTTTAAGAGGTCAGAAACAATAACATCGTTACTTG CAAATAAAGAAACAAGGAAGAGGCGTAACTAGGTATAAGTCTTGACCAGGAGATAGAGAATCTG AATGATTCTAAGCCCATTGTTGCCATCAGCTTAACATCTTCCTGCCAAAGTAACAACAACATTG AATTTGAGAAAACAGAGTCAGAGACTTACGACAACTTAAAAGTAAAGGGCAAAGAAGAGAGAGA GAGGAACCTTGTATTTGTGATACCCATCAGATGTTACATCTCCATTACCTGTATCGTCTGCAAG TTTTGAAGAAGAATATATGAGAAATTTTCCAATATAAACCCTCTAATAATGACTCATAATTTGA ACCGCAGAGTAGTAACCTATGATATGAACTACACAAAGATACATGAATCTTTAATAATCCCTAG CCAGAACTTATGTTCTATTCGTAAATTGTTCACAAAAACAAAAACTCAAACAAAAACAAAAATA TATTTACAAGAGTTGGAGAAAGTATCCCAGACACTAGGAGTTCTTCCATCTTCAGCAACAGCTC CTTCCCACTATTTCCACAAATTCCCCAACATAGACAAAAGAAACTCGATTTTATAGACAACACA ACTAAGATGAAGAACAGAGAAGCAGAGTCGAACCTGATAAGCAGAAGTGGCGGCTCCGAAGAGG AAATCCTTTGGAAAACTGTTTCTGGTAAAGGCATCACTGTAGCTTGTTGCCAAGAGGATGACCA GAAAAATGAAAAGTAGAGAGAAATGTTTCATTTTTATTTTGCGCCTTTCGTTTTAGTGTAGAGT TTTGAAGATTTGGTTTTCAAGAAAAAATAATAATAAAAAATGAAGGTGTTTGGAGTTCTCTTGA CCGTAGCAAAACTGCGCAAGTGATCGATCTTTTTCTCTATGTGACAAATATATATATGTGAAGA AGAAAGATTCAAGAAATATCTCTTTTCGGTTTCCTTGTGATGTGACCGACATATATTTCCACTT ATATTATGTACACTACAATCATAAATTTGTTCTCACATGTGGATGTGGTTCCATGCGAGGGGAG CGACCAATCACTATAACTGATGATGTTAATTATTGGCCCAAATAGGCCCAAACATTTCATAACG TAAGGCCTATACGTTTGACCCAACAACGACAAAATTTACAAAATTCTCGGCAAATTATGATTAT TATAGGTTTCGGATTCATACGGCGTTTTATTCTTTATTCTAAAGTTGGGAAGCTCCTTTGGTAG CTTGGATATCTTTTTTTTTCCTAATGAAGGGTAAGTCGCTTGGATATCTTGCGTTGTGAATTCA AAATCATATTATAAAATTCATCTCTAATCTTTTCTAACATTAGTATGACGGATATACATCAAAG TTACGTTTATTATAAGCTGATTCTGAGCGGTCTATCACTATAGCTTGTATTTTCTTTTCTGATA AAAGATCTTCTATTTATCACTTATAGCTTGTTGTCAAAACTATGACCAGAAAAATGGAAAAAAG AGACATAAGATTCATTTCCATTTTTCCTCCTTTAGTCTGAGTTCAAGAGAATATAATTAAAGGG TTTTAGTGGTTTTCTTGGACCATTAAAAAGAAAAGTACATATCAAGTGACCGATCTTTTCTATT CATTCTTCTTCCACTCACAAAACGCGACAAATATACATGTGAAGAAGGCAATAGAAATGTATCT TCTTTTATTTTTCGGTGTAAGTGTAATCTTTGTGATGTGACTGACATAAATTTCCAATGCAACT CTATCTCTATGTACTGGAAATTTAAGTTGTTAATGTCTTTGTGACTTTTGTGGTTGTGTTCGAA TGCCGTTATCTAGTTTTTATCTTCAAGAATCTATGCAACATTTATTGGTCTCAAAAGTTACATC TTTTTTTCTATGCAATTCTTATAAATTCATTTTGCCAAGTCACTGAGATTTTTCTTTGTATAGA TGAAATAAACCAAATAAGGATCCTTTGGTTAAATATATTACAATGAAGAAGAGCCAGAGATGTT GCTCTGCAACTGAATAGTATCTTGAGTAGCAACATCAATTGTACCATTGAGGAAACCAGTGTAC CAAGAAGCAGAGAGCTTTGGAGTCCTCTTGCGACCAGGATCGCTGAAATTCACATAGTACATTC CGAAGCTGGTCGTATATCCACTCAGTAACTCATACAAATCAATCATCGACCATACAAAGTAACC TCTCGTGTCCGATCCATTCCTGATCAGTAAGTAAAACTGGAATTAGACCATGAATCATAATGTA GTAATATGAGGACTAAAAGATGCAGAAGGAGAATCATACTTGATGGCATTGAGCATAGCACCAA TGTAAGCTTGAATGAATTCAATTCTTTGTGTGTCTTGTAATGTCGAGTCGCGTCCCATCGGCAT ACCTGTTTTTATATTTAAAAAATTGCAAGTTGAAGAATCTTAAAGAACAAGAAAGTGTGCTTTC AAGCAGACACAACAGAGTAAGAAAACAAAAGAGAATGAAGTGTTGTACCATTTTCAAGAATATA GATTGGAGGATTGTTATAGCTCTGCTTTATATACTCAAGAATACCTTCAAGACCCCATGGAGTA GCCTCCCACTTCAAGAAAAACAATTGATTCAAGAAGAGCTTTTGGCAAAAAATATATATGTATT ATGCAAATTTGCAGGACCTTACCAGAAGAAATGAAGAATTCGCAGCGGCTGTCCAAAGAAGAAG AACTATTAGTTTTAAGAATTGATCAGAAGCATTTTTCTATTGGTTAATGATGAAAGAAAACTAA TCTTACAAATCATATATACTCCCATGTCTTTAAAGAAGCCTTCATTCATGCTGGGAAAGATAGA AGGTGAGGGTTTGTTTGTGACATAAAATGTCGTGTAGTGAATAATTCCTATAAAGTCAGATGAT CCTTTAAGTTGCTCTGACTCTTCCTCCGAAAACACCGGTAATCTCGATCCAACAGTTCTCTTCA TTTCATCCGGATAGTCTCCAAATACCAAAGGCTTCAACATC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.810649847

Conservation Information
Conserved circRNAs	NA
PMCS	0.810649847

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of 4_circ_ag.2

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