Detail information of 1_circ_ag.3


General Information
CircRNA Name 1_circ_ag.3
ID in PlantcircBase ath_circ_003604
Alias NA
Organism Arabidpsis thaliana
Position chr1: 7131693-7135467  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.2 AT1G20150_circ_g.1 AT1G20160_circ_g.1 AT1G20190_circ_g.1 AT1G20190_circ_g.2 AT1G20190_circ_g.3 AT1G20200_circ_g.1 AT1G20200_circ_g.2 AT1G20200_circ_g.3 AT1G20220_circ_g.1 AT1G20220_circ_g.2 AT1G20220_circ_g.3 AT1G20220_circ_g.4 AT1G20220_circ_g.5 AT1G20220_circ_g.6 AT1G20225_circ_g.1 AT1G20260_circ_g.1 AT1G20260_circ_g.2 AT1G20260_circ_g.3 AT1G20260_circ_g.4 AT1G20260_circ_g.5 AT1G20270_circ_g.1 AT1G20270_circ_g.2 AT1G20270_circ_g.3 AT1G20330_circ_g.1 AT1G20340_circ_g.1 AT1G20340_circ_g.2 AT1G20340_circ_g.3 AT1G20340_circ_g.4 AT1G20340_circ_g.5 AT1G20340_circ_g.6 AT1G20370_circ_g.1 AT1G20370_circ_g.2 AT1G20380_circ_g.1 AT1G20380_circ_g.2 AT1G20410_circ_g.1 AT1G20410_circ_g.2 AT1G20410_circ_g.3 AT1G20440_circ_g.1 AT1G20440_circ_g.2 AT1G20440_circ_g.3 AT1G20440_circ_g.4 AT1G20440_circ_g.5 AT1G20440_circ_g.6 AT1G20440_circ_g.7 AT1G20440_circ_g.8 AT1G20440_circ_g.9 AT1G20440_circ_g.10 AT1G20440_circ_g.11 AT1G20440_circ_g.12 AT1G20440_circ_g.13 AT1G20440_circ_g.14 AT1G20440_circ_g.15 AT1G20440_circ_g.16 1_circ_ag.17 AT1G20440_circ_g.18 AT1G20440_circ_g.19 AT1G20440_circ_g.20 AT1G20450_circ_g.1 AT1G20450_circ_g.2 AT1G20450_circ_g.3 AT1G20450_circ_g.4 AT1G20450_circ_g.5 AT1G20450_circ_g.6 AT1G20450_circ_g.7 AT1G20450_circ_g.8 AT1G20450_circ_g.9 AT1G20450_circ_g.10 AT1G20450_circ_g.11 AT1G20450_circ_g.12 AT1G20510_circ_g.1 AT1G20540_circ_g.1 AT1G20550_circ_g.1 AT1G20550_circ_g.2 AT1G20550_circ_g.3 AT1G20575_circ_g.1 AT1G20575_circ_g.2 AT1G20575_circ_g.3 AT1G20580_circ_g.1 1_circ_ag.2 1_circ_ag.4 AT1G20610_circ_g.1 AT1G20610_circ_g.2 AT1G20610_circ_g.3 AT1G20620_circ_g.1 AT1G20620_circ_g.2 AT1G20620_circ_g.3 AT1G20620_circ_g.4 AT1G20620_circ_g.5 AT1G20620_circ_g.6 AT1G20620_circ_g.7 AT1G20620_circ_g.8 1_circ_ag.9 AT1G20620_circ_g.10 AT1G20620_circ_g.11 AT1G20620_circ_g.12 AT1G20620_circ_g.13 1_circ_ag.14 AT1G20620_circ_g.15 AT1G20620_circ_g.16 AT1G20620_circ_g.17 AT1G20620_circ_g.18 AT1G20620_circ_g.19 AT1G20620_circ_g.20 AT1G20620_circ_g.21 AT1G20620_circ_g.22 AT1G20620_circ_g.23 1_circ_ag.24
Support reads 10
Tissues root, aerial, inflorescences
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGTGTAGATTGCTGAGGCCGCCAGCTTAGATGGAAGATACTCTAGCATCTCATACTCCACAAG
GCAAAGCTCGATCATAAAGAATGATAAAATCTCAAGcttcttgtcagattgggcagctttgaga
aatcgtttcatgaaaacatatggagttggtagagagaaattgaattgcaaggtgttggccatta
gcttctcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCTTGTCAGATTGGGCAGCTTTGAGAAATCGTTTCATGAAAACATATGGAGTTGGTAGAGAG
AAATTGAATTGCAAGGTGTTGGCCATTAGCTTCTCCTGCAATAGAAACCAAAAACAGGTAAATT
CAACTATGAAGCATCAACCAGTGGTAGTTAATGATCAAGACAAAGTTGTGTATTCACCATATCT
AGCACTTCTCTTCTAGAGTAAGCTTTGTCAGAGATCAAGATGAGATCATCTACCACTGGAACTG
AAACTTCTTCATATTTACATGCGAGCAACAAAGCAGTAACACCAACAAGCTGAAGCTTTTTCCT
CACGATTTGATGAACCGCAAGGAATCTGTCGATGACAAAAATCTTCTTAGTTTTTCCCTAAAGA
CAAGAATGAACAAACATAACTTGTATTGAGATAACAAGAACTCAAGTTACATAAGAAGTCGTTC
AAGTAGAGCATATACATGTATGATATAGAAATTTATACGACATGGTATCAAGAAACAGAGCTTT
TTATTATAAAAAATTCATCATCAGCTATTAGAGAGGTCTCTAGTCTATATCTCTCATTGACGTT
TTTGAAAAACAGAGCAGTATTTTTACAGAGTTAAAATAATTATTTTGTCGATTAAAAAAGTTAA
ATGTGTTTTTATTAATTACAACTAGATGAACACCCATGCGTAGCATCGGTTTTTGTTTTTTGAA
TTGTCGGAAAAATATGATTATGGTTTTTTTTTTATTTTGATGTTCAATATAATTATTACTATAA
TTCATATCTATTTAATATAATTATTAATTTTTATGATTAGTTTCATCTATAACTCGAAATATCA
ATTCTACTATAATATGAAAATTTATATATCTATTTTTCTAATATTTAACTATCATAATCACATA
CAACAACAATATATGATAGATTGATAAAATGAATGTAGTTATATTACTTATGTGTTTTGAAACT
TGTCTAACTTAATTATAACAAACAATTTTTTATTCCATATATTTTTTTGTCATCTAGTAAACAA
TCACATCATGATATGCTAGTAATTTAAGTCAACACTTTAATTATTTTCTTTTGCATATAACAAT
ATAATGTCTTATGTTTTTTTTGGTATGTCTAATGTGTCAGATGACTATTACGTGAAAAAAATTG
TTTATCAATATTACCAAGTTATCAGAACGCACAAAAATATACAGAAAGAAGGTCATATGATAAA
ATCATATTCACAAAACGTAATAATAAAAAAATATCTAACTAAAATTACTAAACTAATATGAGGT
GGCCAACTTTCATATATATGATTTAAATGGAAAATCAAAGTATAAAAGGAAATTGATTTGCTAG
AAAGAAGGAAAAAAACAAACCCTATAGATAGGTTCTTCAGCAAGGTAAGATAGAGAGAACGTGA
GAGATCGATCATGGCGAATTCAACAGGTAAACCGACAAGTTCAACACAAGAAGATGAAGAAGTT
ACATACATATTAGCACAATTGATGCAAGATGTTATGGATCGTGAAGAGGATATAGATGATGAAG
ACGATATAGATGATGAGGTTGCGTCCCTTCCATTATTACTAGTAAGCCAAGCTAATCAAAAGCA
GTCTAGGAAGAGGGAAGAAAAAACTGAAAAAAATCAACCTAAGAGGGTTAAGAATCAGAACATC
ATGAAAATAAATATCCATGACTTTTCAGAAGAAACTCTGAGGTTAATTGAGGATTGGTACAACG
CTGAACTCGATCCACAGGATATATTCGGCGATGATGAGGTGACGAGGCGATTCAGCCGACCGAT
AAAGAAGCAGTTGATGTCGAGCGACGTCGATACAGATCAAAGCAGGCTCATGTTATCGAAGGAG
CAAGTGAAGGAGAAGATGCTTCCTTTTCTAGAAGAATCAGAGGATCCGGTAAAGGGGGTTGATG
TTTCGGTGTATGGACCAGACGGGGAAGTTCAACAGATGAAGTTCAAGATGTGGAATGGGGATAA
AACACCTGTCTTAACTTCAGGGTGGATGCAGTTTGTGGCAGATTATGGTCTTTTGAAGACTTCT
GATTTTGTCACTGTTTGGATGTTTAGGCACATAAAGACTCGAAAGCTTTGCTTTGCTATTCACT
ACGTTACATTTTCTTTAAGAAATTAACTAATCGAGTGGGATGATCTTGAAGACTACTGCTTTCT
TGAATCCAAATTAGGGTGAGATCTTCAAGAATTAATACAGTGGTCAAATGTGAATAGTCTCAAG
TATGCAGGTCTTAAAGCTTCGTCTTCTTTGCGAATAATGTGCTGTATGGGTTTTGAATGAACCT
GTAATTATTGGGAAAGAACTACCTGTAGTTTTTTAGTTCAGAAAGTCTTTAACTCTTTTAATGT
GTTATTGTTCATAAGTATTCATAAATAATCTGTCAACTTAATGGGTTTGTTTATTAATAATTGT
CACTTAACTTTTGTTTTCGGTTTTTCATTGCTATGTTACAGGATGGTAAGGTATCACAGCTTGA
GCATGTCTTCATTCGAGGCAGCAAAGTCAGGTGCTGCAACACTTCTTAGAGAACACTGTAAAAC
CAAACAAAGGAGAACAAGAGAGATATGTCCAGATGCACTACTAGTTCTGTATTTTGGGTTACCA
AGATGTTTGAATCATTGACAAGTTTTCGTTGTGATCTATTTTCTTCTTTGCGCATTCTCCATTT
CTGACAGTAGATGAGTAAAACAAAGTACATTGTTTTCATAAAGGTCTTAATAAGACTAAGATCA
GAAAACAAAGATAAATTGAAGGAACAAGATTATGAAATACTAGAAGTAATGATTATATCCTCCT
TCAATAAAGACTGCAATACTGTAGACTTTGAGTTGTCTAAATAACGTAGTCTATATGGTCATTT
ATAACATTAATATATAAGCTATAAAAGAATATTGTACTTGTATTTTCATCATGTAAAAACCTTG
TCAACTGCAATTTTCCCAAATTACAATCCAAAAAATTGCCATGTACTTGTAGAATATTTGATAG
GGTCTAGAGATTCAGTTCCAGAGTACCAAAACGACATGTAGAAGAATATTTGATTCAGTCTAGA
GGTTCAGCTCCCGAGTAATATTAACCAAACTGGATCATAGATTTTCCTGAGTCTATACAAGAAT
CGATTCACAAGTTGAATATAGGAAAGCATGATATCAGAAGATTCTTTTTATTCTCTCTCAAGTG
AAGAAAGATCTAAAGACCTTAGAAAGAGAAGAATACACTCTTTTTGGGCTACTTGCCATGATAT
CTAAAGATCCATTCTTCTCCCATTTTGGGCAACTTGCTCTACTATCTCTCTTTCTCTCACACTC
TTTTTGTTCTAAAGAAAAACTCGAGTTAAGTCATATTAGATTCTTATTAATATTAAATCAGAAA
CCCAGCTGGTTCAGTTCTTGCAGCATGACAGAACTTAGATGTGTTGTACTTTCTGTGAACTCCT
GTGAGCTTCCCTGTTCCTGCCTTGTGATGGAAAGCAACCATCTTTCTCGCACATGCCCTAGAAA
AAACACAAAAACCCACTGTCAGGATACCAAAATCTCATGTCATGGGGTTTTCAAAAAAATCAAT
GTATGTTCTTACAGTAGCTGTTTTTCGTTGTAGCCTGTGTGAAACTCACAGGTTTTGCTCCATT
CTTCAAATCCCTTAAGTGTACACTGAGCAGTGTAGATTGCTGAGGCCGCCAGCTTAGATGGAAG
ATACTCTAGCATCTCATACTCCACAAGGCAAAGCTCGATCATAAAGAATGATAAAATCTCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.6008827
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017