Detail information of Os10g0167300_circ_g.3


General Information
CircRNA Name Os10g0167300_circ_g.3
ID in PlantcircBase osa_circ_006277
Alias NA
Organism Oryza sativa
Position chr10: 4641005-4642016  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method CIRCexplorer
Parent gene Os10g0167300
Parent gene annotation Similar to Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate dehydrata
se 2) (2-phospho- D-glycerate hydro-lyase 2). (Os10t0167300-01);
Similar to Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate dehydrata
se 2) (2-phospho- D-glycerate hydro-lyase 2). (Os10t0167300-02)
Parent gene strand -
Alternative splicing Os10g0167300_circ_g.2 Os10g0167300_circ_g.4 Os10g0167300_circ_g.5 Os10g0167300_circ_g.6 Os10g0167300_circ_g.7 Os10g0167300_circ_g.8 Os10g0167300_circ_g.9 Os10g0167300_circ_g.10 Os10g0167300_circ_g.11 Os10g0167300_circ_g.12 Os10g0167300_circ_g.13 Os10g0167300_circ_g.14 Os10g0167300_circ_g.15 Os10g0167300_circ_g.16
Support reads 1
Tissues shoot, root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os10t0167300-01:5
Os10t0167300-02:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGAAGATGAAAGAATTACCTTCAGGTTGTGGTACACTTCAACACCCATCTTCATGGCCTCCTT
GAATGAAGCGGCCCCAGTAGGAAGGATCATGAACTCtgttgggttggtgacaaggaggtcatca
ccgacaatctgcacttgctctccaatttcagcggtcatcttagcatagtgttcccagtcatcct
ggtcaaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGTTGGGTTGGTGACAAGGAGGTCATCACCGACAATCTGCACTTGCTCTCCAATTTCAGCGGTC
ATCTTAGCATAGTGTTCCCAGTCATCCTGGTCAAACGGATCCTCAATCGAGACAATGGGGTATT
CACTGACAAATGACTTGTATACATTCTTCAGGCTATCACCAGATATCTTTTGTGAACCATCATT
GTTCTACAACAAAAAGAATCACAAATGTTCCCAATAAGTTCACAGCATTATATACATCTACATG
ATATCAAACAGTGAGCCAATCCCTACTATCAAAAATGAAACAGATTGCCACCTACCTCCTCCTT
GAAGTTAAGGTCATAGGTTTTGTCCTTGTCATTGTAGAATTCCGAAGCAGCAACATCCATTCCA
ATGACAACCTACCATATCAGGTTGCAAAAAAAGTCTCAAGCCTCAGTCAATCAAAAACATTAAC
TTATGCAGAAAGATAAACAATAAATTAATCAAAGTACACAAACCTTGCCAGTGTATCCAGCCTT
TTCAATTGCAGTCTTCAAGAGCTCAAGACCCTCCTTGTTTTCCTGCAATATCACACAACACAAA
CGATTCAAACCACATGCTAAGTATATTCATTTAGATTTCTAATTACGGATTAGCTTCATACATC
AAAACAGAAGTTATCTCAGCATCTAACATCAAGCAAATACAAAGCAAAACAGGGAAACATAATT
GAAGTGAAGCACTTCACATGGATCAACAGCATAGTGGAAAGAAAGATAATTGAATTCACTGCTG
CAGGCATAAGTACCTGAATGTTAGGAGCAAAACCACCTTCATCACCAACATTGGTGGCATCCTG
ACCATACTTCTTCTTGATAACAGACTGTACAGATAAAATTAATTAATTTTCAATGACGTAAGAT
GGGGAAAAGGTTTAAAATGAAGATGAAAGAATTACCTTCAGGTTGTGGTACACTTCAACACCCA
TCTTCATGGCCTCCTTGAATGAAGCGGCCCCAGTAGGAAGGATCATGAACTC
Conservation Information
Conserved circRNAs NA
PMCS 0.252207362
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017