Detail information of Os10g0167300_circ_g.6


General Information
CircRNA Name Os10g0167300_circ_g.6
ID in PlantcircBase osa_circ_006280
Alias Os_ciR3626
Organism Oryza sativa
Position chr10: 4641316-4641546  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os10g0167300
Parent gene annotation Similar to Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate dehydrata
se 2) (2-phospho- D-glycerate hydro-lyase 2). (Os10t0167300-01);
Similar to Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate dehydrata
se 2) (2-phospho- D-glycerate hydro-lyase 2). (Os10t0167300-02)
Parent gene strand -
Alternative splicing Os10g0167300_circ_g.2 Os10g0167300_circ_g.3 Os10g0167300_circ_g.4 Os10g0167300_circ_g.5 Os10g0167300_circ_g.7 Os10g0167300_circ_g.8 Os10g0167300_circ_g.9 Os10g0167300_circ_g.10 Os10g0167300_circ_g.11 Os10g0167300_circ_g.12 Os10g0167300_circ_g.13 Os10g0167300_circ_g.14 Os10g0167300_circ_g.15 Os10g0167300_circ_g.16
Support reads 2
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os10t0167300-02:2
Os10t0167300-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTAACTTATGCAGAAAGATAAACAATAAATTAATCAAAGTACACAAACCTTGCCAGTGTATCC
AGCCTTTTCAATTGCAGTCTTCAAGAGCTCAAGACCctcctccttgaagttaaggtcataggtt
ttgtccttgtcattgtagaattccgaagcagcaacatccattccaatgacaacctaccatatca
ggttgcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCTCCTTGAAGTTAAGGTCATAGGTTTTGTCCTTGTCATTGTAGAATTCCGAAGCAGCAACA
TCCATTCCAATGACAACCTACCATATCAGGTTGCAAAAAAAGTCTCAAGCCTCAGTCAATCAAA
AACATTAACTTATGCAGAAAGATAAACAATAAATTAATCAAAGTACACAAACCTTGCCAGTGTA
TCCAGCCTTTTCAATTGCAGTCTTCAAGAGCTCAAGACC
Conservation Information
Conserved circRNAs NA
PMCS 0.467374856
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015