Detail information of Os10g0167300_circ_g.2


General Information
CircRNA Name Os10g0167300_circ_g.2
ID in PlantcircBase osa_circ_006276
Alias NA
Organism Oryza sativa
Position chr10: 4641005-4641199  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene Os10g0167300
Parent gene annotation Similar to Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate dehydrata
se 2) (2-phospho- D-glycerate hydro-lyase 2). (Os10t0167300-01);
Similar to Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate dehydrata
se 2) (2-phospho- D-glycerate hydro-lyase 2). (Os10t0167300-02)
Parent gene strand -
Alternative splicing Os10g0167300_circ_g.3 Os10g0167300_circ_g.4 Os10g0167300_circ_g.5 Os10g0167300_circ_g.6 Os10g0167300_circ_g.7 Os10g0167300_circ_g.8 Os10g0167300_circ_g.9 Os10g0167300_circ_g.10 Os10g0167300_circ_g.11 Os10g0167300_circ_g.12 Os10g0167300_circ_g.13 Os10g0167300_circ_g.14 Os10g0167300_circ_g.15 Os10g0167300_circ_g.16
Support reads 15
Tissues pistil
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0167300-02:1
Os10t0167300-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACGGATCCTCAATCGAGACAATGGGGTATTCACTGACAAATGACTTGTATACATTCTTCAGGCT
ATCACCAGATATCTTTTGTGAACCATCATTGTTtgttgggttggtgacaaggaggtcatcaccg
acaatctgcacttgctctccaatttcagcggtcatcttagcatagtgttcccagtcatcctggt
caa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGTTGGGTTGGTGACAAGGAGGTCATCACCGACAATCTGCACTTGCTCTCCAATTTCAGCGGTC
ATCTTAGCATAGTGTTCCCAGTCATCCTGGTCAAACGGATCCTCAATCGAGACAATGGGGTATT
CACTGACAAATGACTTGTATACATTCTTCAGGCTATCACCAGATATCTTTTGTGAACCATCATT
GTT
Conservation Information
Conserved circRNAs NA
PMCS 0.573687778
Functional Information
Coding potential Y
Potential coding position 4641124-4641077(+)
4641143-4641015(+)
4641072-4641007(-)
4641032-4641162(-)
Potential amino acid sequence MGYSLTNDLYTFFRLSPDIFCEPSLFVGLVTRRSSPTICTCSPISAVILA*(+)
MTCIHSSGYHQISFVNHHCLLGW*(+)
MTAEIGEQVQIVGDDLLVTNPTNNDGSQKISGDSLKNVYKSFVSEYPIVSIEDPFDQDDWEHYA
KMTAEIGEQVQIVGDDLLVTNPTNNDGSQKISGDSLKNVYKSFVSEYPIVSIEDPFDQDDWEHY
AKMTAEIGEQVQIVGDDLLVTNPTNNDGSQKISGDSLKNVYKSFVSEYPIVSIEDPFDQDDWEH
YAKMTAEIGEQVQIVGDDLLVTNPT(-)
MTSLSPTQQTMMVHKRYLVIA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017