Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os10g0167300_circ_g.2 |
ID in PlantcircBase | osa_circ_006276 |
Alias | NA |
Organism | Oryza sativa |
Position | chr10: 4641005-4641199 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | Os10g0167300 |
Parent gene annotation |
Similar to Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate dehydrata se 2) (2-phospho- D-glycerate hydro-lyase 2). (Os10t0167300-01); Similar to Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate dehydrata se 2) (2-phospho- D-glycerate hydro-lyase 2). (Os10t0167300-02) |
Parent gene strand | - |
Alternative splicing | Os10g0167300_circ_g.3 Os10g0167300_circ_g.4 Os10g0167300_circ_g.5 Os10g0167300_circ_g.6 Os10g0167300_circ_g.7 Os10g0167300_circ_g.8 Os10g0167300_circ_g.9 Os10g0167300_circ_g.10 Os10g0167300_circ_g.11 Os10g0167300_circ_g.12 Os10g0167300_circ_g.13 Os10g0167300_circ_g.14 Os10g0167300_circ_g.15 Os10g0167300_circ_g.16 |
Support reads | 15 |
Tissues | pistil |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os10t0167300-02:1 Os10t0167300-01:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.573687778 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
4641124-4641077(+) 4641143-4641015(+) 4641072-4641007(-) 4641032-4641162(-) |
Potential amino acid sequence |
MGYSLTNDLYTFFRLSPDIFCEPSLFVGLVTRRSSPTICTCSPISAVILA*(+) MTCIHSSGYHQISFVNHHCLLGW*(+) MTAEIGEQVQIVGDDLLVTNPTNNDGSQKISGDSLKNVYKSFVSEYPIVSIEDPFDQDDWEHYA KMTAEIGEQVQIVGDDLLVTNPTNNDGSQKISGDSLKNVYKSFVSEYPIVSIEDPFDQDDWEHY AKMTAEIGEQVQIVGDDLLVTNPTNNDGSQKISGDSLKNVYKSFVSEYPIVSIEDPFDQDDWEH YAKMTAEIGEQVQIVGDDLLVTNPT(-) MTSLSPTQQTMMVHKRYLVIA*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |