Detail information of Os10g0167300_circ_g.9


General Information
CircRNA Name Os10g0167300_circ_g.9
ID in PlantcircBase osa_circ_006283
Alias NA
Organism Oryza sativa
Position chr10: 4641496-4643293  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0167300
Parent gene annotation Similar to Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate dehydrata
se 2) (2-phospho- D-glycerate hydro-lyase 2). (Os10t0167300-01);
Similar to Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate dehydrata
se 2) (2-phospho- D-glycerate hydro-lyase 2). (Os10t0167300-02)
Parent gene strand -
Alternative splicing Os10g0167300_circ_g.2 Os10g0167300_circ_g.3 Os10g0167300_circ_g.4 Os10g0167300_circ_g.5 Os10g0167300_circ_g.6 Os10g0167300_circ_g.7 Os10g0167300_circ_g.8 Os10g0167300_circ_g.10 Os10g0167300_circ_g.11 Os10g0167300_circ_g.12 Os10g0167300_circ_g.13 Os10g0167300_circ_g.14 Os10g0167300_circ_g.15 Os10g0167300_circ_g.16
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0167300-01:8
Os10t0167300-02:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATAGTTTGCAACATAAAAAGTATCAAAGGCAAACCTTGGAAACACCCTTTCCCAAGTAATCAG
ATCCACCGTCCCTCAATTCGAGAGCTTCATAGACACcttgccagtgtatccagccttttcaatt
gcagtcttcaagagctcaagaccctccttgttttcctgcaatatcacacaacacaaacgattca
aaccacat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGCCAGTGTATCCAGCCTTTTCAATTGCAGTCTTCAAGAGCTCAAGACCCTCCTTGTTTTCC
TGCAATATCACACAACACAAACGATTCAAACCACATGCTAAGTATATTCATTTAGATTTCTAAT
TACGGATTAGCTTCATACATCAAAACAGAAGTTATCTCAGCATCTAACATCAAGCAAATACAAA
GCAAAACAGGGAAACATAATTGAAGTGAAGCACTTCACATGGATCAACAGCATAGTGGAAAGAA
AGATAATTGAATTCACTGCTGCAGGCATAAGTACCTGAATGTTAGGAGCAAAACCACCTTCATC
ACCAACATTGGTGGCATCCTGACCATACTTCTTCTTGATAACAGACTGTACAGATAAAATTAAT
TAATTTTCAATGACGTAAGATGGGGAAAAGGTTTAAAATGAAGATGAAAGAATTACCTTCAGGT
TGTGGTACACTTCAACACCCATCTTCATGGCCTCCTTGAATGAAGCGGCCCCAGTAGGAAGGAT
CATGAACTCCTGCAATATAGAGCACATCATTAAATAACTTTATGAGCAACACATAGAATGAGAA
AATCTTAGTTCAGATCACTGCCTGCATGGCAAGCTTGTTTCCAGCATGTGATCCACCGTTAATG
ACGTTGAATGCAGGTACGGGCAAAACCAGTTGCTTGTTTCCAGCAAGGTTGGCAATGTGCTGCA
AAACAGAACATATTATCAGTTGGCAAATTCATAAACGAATAGATAAGAGGGCAATAAATTGCAC
ATCTTAACATGCAGCAAACCTGGTACAGAGGAATCTTCTTGATGATAGCTCCAGCTTTGCAAAT
GGCCAGTGACACAGCCAGGATTGCATTAGCACCAAGCTGCACATATTGATAAAAGACTTAGTAG
AATCCACTTACAAATGGTACATCTACAATTTTCATGACTAAGGCCCATGACCAGATGGATTAGA
TAATACCTTCTGCTTGCACCACCCCCACTCATTTTTGGTTCCATCAAGCTGCTGAACCATGAAG
TTATCAAGCTCAGCCTGTGACGTAGGGTCCTGCAGAAGAAATAGAGCATATAATGAATTCTGGA
TTTAGTCTCAAAATACAACAGAATAGGTGAACCATGAGACAAACCTTGCCAATCAGAGCTGGGG
CAATAACCGAGTTCACATTGTCGACAGCCTGAAACAACAGAAAAAAAATGTAAAGAAACAAAAA
CAACAAAAATAAAACATTGTAACAGGTACCAGAAACAAATTGATTTTTTATAACCCATGAAACA
AGTATACATCATGATGCAATAGGACCAGTATAGCAAGTTGACTAATTTATTTAAGCAGTTAAAA
GGTGGACAAGTCATAATTGATTTGACTTTGTCTTTTTTTAGTTTAGCCAAGACAATATGACTTT
CTCATCTGCCACTAATTATTTGATAGAGAGAACATAGAATCTGAACTCTTGAGTAGTTTAAATT
ATAGCACAGCAAGGAATGCAACTAGGAACATGCTCCCATGGCTACAAGGAATTTAACCAAAAAT
AGCATTTGTTTGGATTCAATCTCCGATGCTAAAATAGATATTATCAATAGACTCACTTTAAATG
CTAAGAGAGCTTGATGCTGGTGAAGCAATAACATTGAATAAGGGCAGGATGTTTTATGTTAAAA
AATCAACTGATCTCTTACATAGTTAAATATCTAAAATAGTTTGCAACATAAAAAGTATCAAAGG
CAAACCTTGGAAACACCCTTTCCCAAGTAATCAGATCCACCGTCCCTCAATTCGAGAGCTTCAT
AGACAC
Conservation Information
Conserved circRNAs NA
PMCS 0.174485975
Functional Information
Coding potential Y
Potential coding position 4642517-4643272(-)
Potential amino acid sequence MVQQLDGTKNEWGWCKQKLGANAILAVSLAICKAGAIIKKIPLYQHIANLAGNKQLVLPVPAFN
VINGGSHAGNKLAMQAFMILPTGAASFKEAMKMGVEVYHNLKSVIKKKYGQDATNVGDEGGFAP
NIQENKEGLELLKTAIEKAGYTGKVSMKLSN*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017