Detail information of BGIOSGA033869_circ_g.3


General Information
CircRNA Name BGIOSGA033869_circ_g.3
ID in PlantcircBase osi_circ_003172
Alias 11:16268381|16269388
Organism Oryza sativa ssp. indica
Position chr11: 16268381-16269388  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA033869
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA033869_circ_g.1 BGIOSGA033869_circ_g.2 BGIOSGA033869_circ_g.4 BGIOSGA033869_circ_g.5
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA033869-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGAGATACAAAGTACGTGGAATGGGTGTTGCAGACAGTGTGAGAACATCAATAGAAGCCTTGTA
TGATGCAATCTTCTCCTTTTGTTGGACACCAAACTTctttccatgagcaacagccattggaaca
tctggaagagaatccttgagaaattgcagcacatcatctattgctgtcgcatgatgaaataaat
tattaaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTCCATGAGCAACAGCCATTGGAACATCTGGAAGAGAATCCTTGAGAAATTGCAGCACATCA
TCTATTGCTGTCGCATGATGAAATAAATTATTAAACATAAATGCAGATTTGCAATCTAAATTAT
TGAATGACTTTGCATGATATTGCAGCTTCTATATGGACAGTATAGATTGTTAGTGAACGCATCC
AGCAATAGGCTAATTGTTAGAACAATCTGCAATCACAAGTCCAACTTGCTGAGTACTAAACTGA
GATTGGGAATATTGAGAAAAAAATTGTTTTCAGGTTCATGCATCACAAGTATATGCTGTGAACA
ATAAGTCATCTGAAGATAACAAAGTTTCCACCTTTTATTCGAGGAACAACATAGAAAACTTGAC
CACCACGTGCCAACTCAAACTTAATAGCTGATAGAGCCCTTTCTTTGCTAAATCCTGACACGTA
GGTCCTTACAGCAACTCTTTCTGGAGGCGGCGTAGACATTAAACTGAAATCATAATACATATGC
TTGTGTCATGGAAAAAAATGAAAACAATTCCGATATTAAATGCATCCAAGGTATTGGAGTTATG
AAGAATGAATTAAATATAGAGTCAGCAGAATAGCGCTATGATCACATTAAATGCACGAATTATC
TCAAGAAAACAGTAGTAACTATTGCAAATGTAATAAAATGGCTCAAGTGAATCCCCTAAAAAAA
CTCTAGTGATTACTCGTAACCATTGTCCACAAATTATCTCAAGAAAACAGTGGTAATAAATTAG
CAATATCTCGTAATAAATTGTGGACAATGGTTACGAGTAATAAATTAGCAATATCTCGTCCAAT
ATCTCGTCCAACAGAAAACAGAAGAAAAAAATAGTATTGTTGCCATCTTACCTGGCATCACGGA
AACCTGTCAACGCGAGATACAAAGTACGTGGAATGGGTGTTGCAGACAGTGTGAGAACATCAAT
AGAAGCCTTGTATGATGCAATCTTCTCCTTTTGTTGGACACCAAACTT
Conservation Information
Conserved circRNAs osa_circ_009491*
PMCS
Functional Information
Coding potential Y
Potential coding position 16268869-16268383(-)
16268447-16269285(-)
16269310-16268387(+)
16269353-16268424(+)
Potential amino acid sequence MSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMA
VAHGKKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVS
GFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKFGVQQKEKIA
SYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKERALSAIKFELA
RGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKFGVQQKEKIASYKASIDVLTLSATPI
PRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAID
DVLQFLKDSLPDVPMAVAHGK(-)
MMCCNFSRILFQMFQWLLLMERSLVSNKRRRLHHTRLLLMFSHCLQHPFHVLCISR*(-)
MGVADSVRTSIEALYDAIFSFCWTPNFFP*(+)
MMQSSPFVGHQTSFHEQQPLEHLEENP*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description leaf senescence
Other Information
References Huang et al., 2021