Detail information of BGIOSGA033869_circ_g.4


General Information
CircRNA Name BGIOSGA033869_circ_g.4
ID in PlantcircBase osi_circ_003173
Alias 11:16269264|16271192
Organism Oryza sativa ssp. indica
Position chr11: 16269264-16271192  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA033869
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA033869_circ_g.1 BGIOSGA033869_circ_g.2 BGIOSGA033869_circ_g.3 BGIOSGA033869_circ_g.5
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA033869-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATTTTCTGAACAGCAAGCTTCCCTTTCAGTCTTCTCTTCTCCCACGTGGAAGGATCGTTCAGT
TTGCTCAAATTCCGTGGTCTCTGCTTCTCGTGAGGTctggcatcacggaaacctgtcaacgcga
gatacaaagtacgtggaatgggtgttgcagacagtgtgagaacatcaatagaagccttgtatga
tgcaatct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGCATCACGGAAACCTGTCAACGCGAGATACAAAGTACGTGGAATGGGTGTTGCAGACAGTG
TGAGAACATCAATAGAAGCCTTGTATGATGCAATCTTCTCCTTTTGTTGGACACCAAACTTCTG
TTGAAACATAGAGTTTGTGAATATATATAAAATAAAATAAAATGCATGGCTGATTTTGGTTGCG
AGATATTTAGTCAAAATTTATGGAACACTAGAGTTAAGTTTTCAGATAACCATTCCTGACCTTT
AGAAAAATAACAAAAAGTAAACATAAAACAATCTAGTATTTTTTTTTGTCGAATATAATCTACA
ACAAAAAGGCTTTCCCTTGCTATATATATTTCTTGTAGAAAACCTTAATATGATTAACTTGTTC
TTTTCATTTCTGGAAAATACTACCCATATTACCATCATTGATGTTATCAATAACAGAAAACTAT
ACCCAAAAAAATCAAACAGAGTAAACATTTATATTTACAAATTACAAAGAGAACCTGTTCTTCA
TCCACCACTAGGAGACCAAGATTGTTATATGCCATACGTTCTGTAAGAACAGCATGAGTTCCAA
CAATAATATGCAAATCACCATTCCTTATCTTTGTTATTAGCTCATCTTTTTCTTCTTTGGTCTG
TAAAGCAGAAATGTACCCCAAGTCATGCAGAAGATAAGAGACGCAAATTCCATCACTTTAACAG
ACAAAATTTAAAGAAACACTAATGCCTTCCTATCTGAGAACCTACATGCCCACATATGAGCACT
ATCACTACAAAAATTGCTGACCAGTAAGTACAAGAATCCCTTATTGAATGTCAGAAGAAAAGGT
TCGGGAAAGACAAAAGGGACTTCCTTAAAAATATACATTTGAACAGTACTTAATAACATTCAGT
GAAACATCAAAAGGTAGAAAACAGGGTATTATTACCGATTGTTGTACAATCGGTAATATATATA
CCTTTTTTTTCTAACAACAACAAAAGGCACATCAACTTTTTTTCCTAATATGGGATAAGATCAT
AAGAGCAGCACACTTTCTAGGGTCAGGACTAATACAGTAATACCTTGTAGTTAAGCAATTAATG
AATATAAAATGATTTCACAGTAACACAAAAATATTACTACTAACACAATAATGCTTGGTTGTTA
ATCAATTGAGGCATACAAAAAATATTGCTTGGAAATGAAAAACACAATGAATTGCCTGGTGGGG
TAACTTTGAGTTGTGCCATGCTATACCTGAGCACCACTAAACATGGCAACCTTAATATCAGGAT
AATTGGAGAAACGCTCAGACATTACATCATAATGTTGCTTGGCTAGTATTACAGTTGGAGCAAG
AACCATAGCTTGAAATCCAGCAGATATAACAATGAATATAGCACGCATTGCAACTTCAGTTTTA
CCAAACCCAACATCTCCACAAATCAATCTGTCCATTGGGGTTTCCCTTTCAGTCAGATCTTTGT
CAACATCTATAAAAGCCTGTCATTAACACGAACTGCATTAAATCCATTGATGTTGATTCAATCC
TATGTATTAGTAAAGTAGTGCATGGATTACTTAATCAACTAGACTCATCAGTTTGCCAATAAGT
CTTGCACAAGGAAAGAATAGCAGCAGCTTCTCTTTCTAAAAAACGACATCAGAATTTCCAGGTG
AACAAAAGAAAGAACAACAGTATTTGATTAAGAGCCGACCTGGTTTTGGTCTGGAGTGGGCTCA
TAGGGAAATTCAGCAGTAAACTGATCCATTCCCACAGGCTTCGGGTAAGGAGGCCTTTTCTGCC
TCATCCTTTGTAAATACAACTCCATCAAATTGACTACCATTTTCTGAACAGCAAGCTTCCCTTT
CAGTCTTCTCTTCTCCCACGTGGAAGGATCGTTCAGTTTGCTCAAATTCCGTGGTCTCTGCTTC
TCGTGAGGT
Conservation Information
Conserved circRNAs osa_circ_009494* osa_circ_009495*
PMCS
Functional Information
Coding potential Y
Potential coding position 16271097-16269266(-)
Potential amino acid sequence MVVNLMELYLQRMRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLIC
GDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKE
EKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTL
SATPIPRTLYLALTGFRDARPHEKQRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQR
MRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGKTEVAM
RAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELITKIRNG
DLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLA
LTGFRDARPHEKQRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRQKRPPYPKPV
GMDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQ
AMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVL
TERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDARPHEK
QRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRQKRPPYPKPVGMDQFTAEFPYE
PTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAK
QHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLL
VVDEEQKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDA(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021