Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os11g0533100_circ_g.3 |
ID in PlantcircBase | osa_circ_009491 |
Alias | Os11circ06428 |
Organism | Oryza sativa |
Position | chr11: 19425868-19426875 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | u-circRNA |
Identification method | CIRCexplorer, SMALT, Segemehl |
Parent gene | Os11g0533100 |
Parent gene annotation |
Similar to CarD-like transcriptional regulator family protein, e xpressed. (Os11t0533100-01) |
Parent gene strand | - |
Alternative splicing | Os11g0533100_circ_g.1 Os11g0533100_circ_g.2 Os11g0533100_circ_g.4 Os11g0533100_circ_g.5 Os11g0533100_circ_g.6 Os11g0533100_circ_g.7 |
Support reads | 2/1 |
Tissues | leaf/shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os11t0533100-01:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_003172* osi_circ_009077 |
PMCS | 0.246153423 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
19426797-19425874(+) 19426840-19425911(+) 19426356-19425870(-) 19425934-19426772(-) |
Potential amino acid sequence |
MGVADSVRTSIEALYDAIFSFCWTPNFFP*(+) MMQSSPFVGHQTSFHEQQPLEHLEENP*(+) MSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMA VAHGKKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVS GFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKFGVQQKEKIA SYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKERALSAIKFELA RGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKFGVQQKEKIASYKASIDVLTLSATPI PRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAID DVLQFLKDSLPDVPMAVAHGK(-) MMCCNFSRILFQMFQWLLLMERSLVSNKRRRLHHTRLLLMFSHCLQHPFHVLCISR*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015;Chu et al., 2017 |