Detail information of Os11g0533100_circ_g.3


General Information
CircRNA Name Os11g0533100_circ_g.3
ID in PlantcircBase osa_circ_009491
Alias Os11circ06428
Organism Oryza sativa
Position chr11: 19425868-19426875  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer, SMALT, Segemehl
Parent gene Os11g0533100
Parent gene annotation Similar to CarD-like transcriptional regulator family protein, e
xpressed. (Os11t0533100-01)
Parent gene strand -
Alternative splicing Os11g0533100_circ_g.1 Os11g0533100_circ_g.2 Os11g0533100_circ_g.4 Os11g0533100_circ_g.5 Os11g0533100_circ_g.6 Os11g0533100_circ_g.7
Support reads 2/1
Tissues leaf/shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0533100-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGAGATACAAAGTACGTGGAATGGGTGTTGCAGACAGTGTGAGAACATCAATAGAAGCCTTGTA
TGATGCAATCTTCTCCTTTTGTTGGACACCAAACTTctttccatgagcaacagccattggaaca
tctggaagagaatccttgagaaattgcagcacatcatctattgctgtcgcatgatgaaataaat
tattaaac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 336
Transcript exons: 19425868-19425938,19426219-19426358,19426751-19426875
CTTTCCATGAGCAACAGCCATTGGAACATCTGGAAGAGAATCCTTGAGAAATTGCAGCACATCA
TCTATTGCTTTTATTCGAGGAACAACATAGAAAACTTGACCACCACGTGCCAACTCAAACTTAA
TAGCTGATAGAGCCCTTTCTTTGCTAAATCCTGACACGTAGGTCCTTACAGCAACTCTTTCTGG
AGGCGGCGTAGACATTAAACTGGCATCACGGAAACCTGTCAACGCGAGATACAAAGTACGTGGA
ATGGGTGTTGCAGACAGTGTGAGAACATCAATAGAAGCCTTGTATGATGCAATCTTCTCCTTTT
GTTGGACACCAAACTT

Genomic sequence CTTTCCATGAGCAACAGCCATTGGAACATCTGGAAGAGAATCCTTGAGAAATTGCAGCACATCA
TCTATTGCTGTCGCATGATGAAATAAATTATTAAACATAAATGCAGATTTGCAATCTAAATTAT
TGAATGACTTTGCATGATATTGCAGCTTCTATATGGACAGTATAGATTGTTAGTGAACGCATCC
AGCAATAGGCTAATTGTTAGAACAATCTGCAATCGCAAGTCCAACTTGCTGAGTACTAAACTGA
GATTGGGAATATTGAGAAAAAAATTGTTTTCAGGTTCATGCATCACAAGTATATGCTGTGAACA
ATAAGTCATCTGAAGATAACAAAGTTTCCACCTTTTATTCGAGGAACAACATAGAAAACTTGAC
CACCACGTGCCAACTCAAACTTAATAGCTGATAGAGCCCTTTCTTTGCTAAATCCTGACACGTA
GGTCCTTACAGCAACTCTTTCTGGAGGCGGCGTAGACATTAAACTGAAATCATAATACATATGC
TTGTGTCATGGAAAAAAATGAAAACAATTCCGAGATTAAATGCATCCAAGGTATTGGAGTTATG
AAGAATGAATTAAATATAGAGTCAGCAGAATAGCGCTATGATCACATTAAATGCACGAATTATC
TCAAGAAAACAGTAGTAACTATTGCAAATGTAATAAAATGGCTCAAGTGAATCCCCTAAAAAAA
CTCTAGTGATTACTCGTAACCATTGTCCACAAATTATCTCAAGAAAACAGTGGTAATAAATTAG
CAATATCTCGTAATAAATTGTGGACAATGGTTACGAGTAATAAATTAGCAATATCTCGTCCAAT
ATCTCGTCCAACAGAAAACAGAAGAAAAAAATAGTATTGTTGCCATCTTACCTGGCATCACGGA
AACCTGTCAACGCGAGATACAAAGTACGTGGAATGGGTGTTGCAGACAGTGTGAGAACATCAAT
AGAAGCCTTGTATGATGCAATCTTCTCCTTTTGTTGGACACCAAACTT
Conservation Information
Conserved circRNAs osi_circ_003172* osi_circ_009077
PMCS 0.246153423
Functional Information
Coding potential Y
Potential coding position 19426797-19425874(+)
19426840-19425911(+)
19426356-19425870(-)
19425934-19426772(-)
Potential amino acid sequence MGVADSVRTSIEALYDAIFSFCWTPNFFP*(+)
MMQSSPFVGHQTSFHEQQPLEHLEENP*(+)
MSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMA
VAHGKKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVS
GFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKFGVQQKEKIA
SYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKERALSAIKFELA
RGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKFGVQQKEKIASYKASIDVLTLSATPI
PRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAID
DVLQFLKDSLPDVPMAVAHGK(-)
MMCCNFSRILFQMFQWLLLMERSLVSNKRRRLHHTRLLLMFSHCLQHPFHVLCISR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Chu et al., 2017