Plant Circular RNA Database

Detail information of BGIOSGA033869_circ_g.1

			
						 General Information
					
						CircRNA Name
						BGIOSGA033869_circ_g.1
					
						ID in PlantcircBase
						osi_circ_003171
					
						Alias
						11:16266552|16269388
					
						Organism
						
							Oryza sativa ssp. indica						
					
						Position
						
							chr11: 16266552-16269388  JBrowse»						
					
						Reference genome
						
							Oryza_indica.ASM465v1.42						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							BGIOSGA033869						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							BGIOSGA033869_circ_g.2 BGIOSGA033869_circ_g.3 BGIOSGA033869_circ_g.4 BGIOSGA033869_circ_g.5 						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						BGIOSGA033869-TA:6

General Information
CircRNA Name	BGIOSGA033869_circ_g.1
ID in PlantcircBase	osi_circ_003171
Alias	11:16266552\|16269388
Organism	Oryza sativa ssp. indica
Position	chr11: 16266552-16269388 JBrowse»
Reference genome	Oryza_indica.ASM465v1.42
Type	e-circRNA
Identification method	find_circ
Parent gene	BGIOSGA033869
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	BGIOSGA033869_circ_g.2 BGIOSGA033869_circ_g.3 BGIOSGA033869_circ_g.4 BGIOSGA033869_circ_g.5
Support reads	NA
Tissues	leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	BGIOSGA033869-TA:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CGAGATACAAAGTACGTGGAATGGGTGTTGCAGACAGTGTGAGAACATCAATAGAAGCCTTGTA
TGATGCAATCTTCTCCTTTTGTTGGACACCAAACTTctttgacaagctatcaaaaagcatatca
aagaatagatcaatgccaacatttgcaacatctccagattgttgctcaccaaacaagcttccga
accccctg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTTGACAAGCTATCAAAAAGCATATCAAAGAATAGATCAATGCCAACATTTGCAACATCTCCA
GATTGTTGCTCACCAAACAAGCTTCCGAACCCCCTGATACCCATATCCTTCTCTGCAACATGAA
AACCTTGACCAAGATCTGAATGCTCCTCAATAGCTCCAAGTCTATCCTGCAGATGGAGATATTG
AACTACAGATGAAGAATGACACAACACAATACAGATTCTGAACTCATTTAACAAAAGATATTTC
AAGGGATAATTGCCTTATTGTCATACAAAAGACCCCTTATTTTTTCTGTAAGATGCCCTATAGA
AATGTATCAGAAAATCAAACATCAGGTGCTGTGGAAGTAGTAAAAGCTACAATTTAGTTCACTT
CATTTTGCCATGGCATAAGGCTAGTCATACAAGTGGTGGTCAGGACTGAGGGCTCAGGAAGCAT
CAATACACTGAAACCTAGTAAGCATAACATACATTCCAAAGTGCCAATAATAGAAATACTGCTT
ATTAGGTGCCACCAAGACTGGTTAACTGATCTTATGTACAACAAACTATCATTAAAGGAAATTT
AGGTTATATTTCTGACTGGGCTTCCATATTTAGTATTATTGCAAATATGCTTTCAGTAACAGTC
ATCAGATGATTTGGATGCTGTGACAAGAAAATGAATATAAATAATAAAATTAGGGGCACTATGG
TAGAGCTAACCGTTGCAATCTTTGAGAGCAAAGACTTATCAGTGTAGAAGAGGTATGCGAAACC
TTCTGTGCCGGATCTTCCTACTCTACCTCGCAACTGTGAAGGAAAAACAAAGGGGTGAACTTGT
AAAATTAGGAAGATGCATTAGAAACAACACGGATAACTAGGGCACATATTACTTTTAAGTACGA
TAACAGTCTCACAGAAGGCTAAACAGAGAGGCACAGGACAGCTCATACTTTTTCAGTTCTTCGT
AGCTTATTTTGTATTTATAAATGAGAAAACTCCAGTAAGATGCTCAAAAACTATTTGCCAATGG
GCATAGTTCAACAATCAATCAAATTTATGTGCTCACATATTATCAAATATAAATGCTAAATAAC
TATGCCATAATGAGGTGCTTCTAGTTTGTTTGCTGGACAGGTGTTTTGCTGTACCCCTTCTTGG
ATTGTTGTTGTTGTTTTATCACTCTCTTATCAATGAAATAAGAGCCTTTTGCCTTTGTTTAAAA
CAAAATGCCATAAAGGAAAAGGAAAGCATATCAGAAAAACAAAGCCACCTGATATAGCTGTGCA
AGCCCAAATAGTTCAGCATACTGAACTACCATCGTGTTGGCATTTGGAATATCTATTCCACTTT
CAATGATGTGTGTGCAGACCAGAATTTTGACTTCTCCACAAGCAAATTTTTCCATAGCAAGTTG
TATGTTCTTTGAAACTTTCTGCGGGAAAAAGAATTGGCAAGAAATTTGATTATGACGAAAGCAC
CATTCGACTATGCAAATAGAACATAAATCTTGATTGTTAACCTAACATTATTCCATATATAATA
ACTAGCAACTTAAGATATAGACTTGACTGAAATTGAAGGTTGTAAGCTTTACAGAAAATAAATA
GTCATTGACAATCAAAATCAAAACGAACTATCGAAGAACAAGGTCATCGACAAGGCCCATATAG
AGTTTCCTGTTAAATTAGTTTGAACACTAATCAGCCATGCAAGGAAATCCTAACAATGATAAGA
GAGTTTCATTGGTAGAAATCCACATGTTGGACTAAAAATAGCCTATAATAAATAATAGTGAAAT
AGCATACTAAACACATCTGAAAGTTTAGTCAATAAACCTTTCCATGAGCAACAGCCATTGGAAC
ATCTGGAAGAGAATCCTTGAGAAATTGCAGCACATCATCTATTGCTGTCGCATGATGAAATAAA
TTATTAAACATAAATGCAGATTTGCAATCTAAATTATTGAATGACTTTGCATGATATTGCAGCT
TCTATATGGACAGTATAGATTGTTAGTGAACGCATCCAGCAATAGGCTAATTGTTAGAACAATC
TGCAATCACAAGTCCAACTTGCTGAGTACTAAACTGAGATTGGGAATATTGAGAAAAAAATTGT
TTTCAGGTTCATGCATCACAAGTATATGCTGTGAACAATAAGTCATCTGAAGATAACAAAGTTT
CCACCTTTTATTCGAGGAACAACATAGAAAACTTGACCACCACGTGCCAACTCAAACTTAATAG
CTGATAGAGCCCTTTCTTTGCTAAATCCTGACACGTAGGTCCTTACAGCAACTCTTTCTGGAGG
CGGCGTAGACATTAAACTGAAATCATAATACATATGCTTGTGTCATGGAAAAAAATGAAAACAA
TTCCGATATTAAATGCATCCAAGGTATTGGAGTTATGAAGAATGAATTAAATATAGAGTCAGCA
GAATAGCGCTATGATCACATTAAATGCACGAATTATCTCAAGAAAACAGTAGTAACTATTGCAA
ATGTAATAAAATGGCTCAAGTGAATCCCCTAAAAAAACTCTAGTGATTACTCGTAACCATTGTC
CACAAATTATCTCAAGAAAACAGTGGTAATAAATTAGCAATATCTCGTAATAAATTGTGGACAA
TGGTTACGAGTAATAAATTAGCAATATCTCGTCCAATATCTCGTCCAACAGAAAACAGAAGAAA
AAAATAGTATTGTTGCCATCTTACCTGGCATCACGGAAACCTGTCAACGCGAGATACAAAGTAC
GTGGAATGGGTGTTGCAGACAGTGTGAGAACATCAATAGAAGCCTTGTATGATGCAATCTTCTC
CTTTTGTTGGACACCAAACTT
						
					

			
		

Sequences
Splice junction sequence	CGAGATACAAAGTACGTGGAATGGGTGTTGCAGACAGTGTGAGAACATCAATAGAAGCCTTGTA TGATGCAATCTTCTCCTTTTGTTGGACACCAAACTTctttgacaagctatcaaaaagcatatca aagaatagatcaatgccaacatttgcaacatctccagattgttgctcaccaaacaagcttccga accccctg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTTGACAAGCTATCAAAAAGCATATCAAAGAATAGATCAATGCCAACATTTGCAACATCTCCA GATTGTTGCTCACCAAACAAGCTTCCGAACCCCCTGATACCCATATCCTTCTCTGCAACATGAA AACCTTGACCAAGATCTGAATGCTCCTCAATAGCTCCAAGTCTATCCTGCAGATGGAGATATTG AACTACAGATGAAGAATGACACAACACAATACAGATTCTGAACTCATTTAACAAAAGATATTTC AAGGGATAATTGCCTTATTGTCATACAAAAGACCCCTTATTTTTTCTGTAAGATGCCCTATAGA AATGTATCAGAAAATCAAACATCAGGTGCTGTGGAAGTAGTAAAAGCTACAATTTAGTTCACTT CATTTTGCCATGGCATAAGGCTAGTCATACAAGTGGTGGTCAGGACTGAGGGCTCAGGAAGCAT CAATACACTGAAACCTAGTAAGCATAACATACATTCCAAAGTGCCAATAATAGAAATACTGCTT ATTAGGTGCCACCAAGACTGGTTAACTGATCTTATGTACAACAAACTATCATTAAAGGAAATTT AGGTTATATTTCTGACTGGGCTTCCATATTTAGTATTATTGCAAATATGCTTTCAGTAACAGTC ATCAGATGATTTGGATGCTGTGACAAGAAAATGAATATAAATAATAAAATTAGGGGCACTATGG TAGAGCTAACCGTTGCAATCTTTGAGAGCAAAGACTTATCAGTGTAGAAGAGGTATGCGAAACC TTCTGTGCCGGATCTTCCTACTCTACCTCGCAACTGTGAAGGAAAAACAAAGGGGTGAACTTGT AAAATTAGGAAGATGCATTAGAAACAACACGGATAACTAGGGCACATATTACTTTTAAGTACGA TAACAGTCTCACAGAAGGCTAAACAGAGAGGCACAGGACAGCTCATACTTTTTCAGTTCTTCGT AGCTTATTTTGTATTTATAAATGAGAAAACTCCAGTAAGATGCTCAAAAACTATTTGCCAATGG GCATAGTTCAACAATCAATCAAATTTATGTGCTCACATATTATCAAATATAAATGCTAAATAAC TATGCCATAATGAGGTGCTTCTAGTTTGTTTGCTGGACAGGTGTTTTGCTGTACCCCTTCTTGG ATTGTTGTTGTTGTTTTATCACTCTCTTATCAATGAAATAAGAGCCTTTTGCCTTTGTTTAAAA CAAAATGCCATAAAGGAAAAGGAAAGCATATCAGAAAAACAAAGCCACCTGATATAGCTGTGCA AGCCCAAATAGTTCAGCATACTGAACTACCATCGTGTTGGCATTTGGAATATCTATTCCACTTT CAATGATGTGTGTGCAGACCAGAATTTTGACTTCTCCACAAGCAAATTTTTCCATAGCAAGTTG TATGTTCTTTGAAACTTTCTGCGGGAAAAAGAATTGGCAAGAAATTTGATTATGACGAAAGCAC CATTCGACTATGCAAATAGAACATAAATCTTGATTGTTAACCTAACATTATTCCATATATAATA ACTAGCAACTTAAGATATAGACTTGACTGAAATTGAAGGTTGTAAGCTTTACAGAAAATAAATA GTCATTGACAATCAAAATCAAAACGAACTATCGAAGAACAAGGTCATCGACAAGGCCCATATAG AGTTTCCTGTTAAATTAGTTTGAACACTAATCAGCCATGCAAGGAAATCCTAACAATGATAAGA GAGTTTCATTGGTAGAAATCCACATGTTGGACTAAAAATAGCCTATAATAAATAATAGTGAAAT AGCATACTAAACACATCTGAAAGTTTAGTCAATAAACCTTTCCATGAGCAACAGCCATTGGAAC ATCTGGAAGAGAATCCTTGAGAAATTGCAGCACATCATCTATTGCTGTCGCATGATGAAATAAA TTATTAAACATAAATGCAGATTTGCAATCTAAATTATTGAATGACTTTGCATGATATTGCAGCT TCTATATGGACAGTATAGATTGTTAGTGAACGCATCCAGCAATAGGCTAATTGTTAGAACAATC TGCAATCACAAGTCCAACTTGCTGAGTACTAAACTGAGATTGGGAATATTGAGAAAAAAATTGT TTTCAGGTTCATGCATCACAAGTATATGCTGTGAACAATAAGTCATCTGAAGATAACAAAGTTT CCACCTTTTATTCGAGGAACAACATAGAAAACTTGACCACCACGTGCCAACTCAAACTTAATAG CTGATAGAGCCCTTTCTTTGCTAAATCCTGACACGTAGGTCCTTACAGCAACTCTTTCTGGAGG CGGCGTAGACATTAAACTGAAATCATAATACATATGCTTGTGTCATGGAAAAAAATGAAAACAA TTCCGATATTAAATGCATCCAAGGTATTGGAGTTATGAAGAATGAATTAAATATAGAGTCAGCA GAATAGCGCTATGATCACATTAAATGCACGAATTATCTCAAGAAAACAGTAGTAACTATTGCAA ATGTAATAAAATGGCTCAAGTGAATCCCCTAAAAAAACTCTAGTGATTACTCGTAACCATTGTC CACAAATTATCTCAAGAAAACAGTGGTAATAAATTAGCAATATCTCGTAATAAATTGTGGACAA TGGTTACGAGTAATAAATTAGCAATATCTCGTCCAATATCTCGTCCAACAGAAAACAGAAGAAA AAAATAGTATTGTTGCCATCTTACCTGGCATCACGGAAACCTGTCAACGCGAGATACAAAGTAC GTGGAATGGGTGTTGCAGACAGTGTGAGAACATCAATAGAAGCCTTGTATGATGCAATCTTCTC CTTTTGTTGGACACCAAACTT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS

Conservation Information
Conserved circRNAs	NA
PMCS

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							16268869-16266554(-)
16266678-16269285(-)
16269310-16266675(+)
16269353-16266649(+)
						
					

						Potential amino acid sequence
						
							MSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMA
VAHGKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRV
GRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDV
ANVGIDLFFDMLFDSLSKKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMST
PPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAH
GKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRS
GTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANV
GIDLFFDMLFDSLSKKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPP
ERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKK
VSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTE
GFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGID
LFFDMLFDSLSKKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERV
AVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKVSK
NIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFA
YLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFF
DMLFDSLSK(-)
MLQRRIWVSGGSEACLVSNNLEMLQMLALIYSLICFLIACQRSLVSNKRRRLHHTRLLLMFSHC
LQHPFHVLCISR*(-)
MGVADSVRTSIEALYDAIFSFCWTPNFFDKLSKSISKNRSMPTFATSPDCCSPNKLPNPLIPIS
FSAT*(+)
MMQSSPFVGHQTSLTSYQKAYQRIDQCQHLQHLQIVAHQTSFRTP*(+)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	16268869-16266554(-) 16266678-16269285(-) 16269310-16266675(+) 16269353-16266649(+)
Potential amino acid sequence	MSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMA VAHGKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRV GRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDV ANVGIDLFFDMLFDSLSKKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMST PPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAH GKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRS GTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANV GIDLFFDMLFDSLSKKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPP ERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKK VSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTE GFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGID LFFDMLFDSLSKKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERV AVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKVSK NIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFA YLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFF DMLFDSLSK(-) MLQRRIWVSGGSEACLVSNNLEMLQMLALIYSLICFLIACQRSLVSNKRRRLHHTRLLLMFSHC LQHPFHVLCISR(-) MGVADSVRTSIEALYDAIFSFCWTPNFFDKLSKSISKNRSMPTFATSPDCCSPNKLPNPLIPIS FSAT(+) MMQSSPFVGHQTSLTSYQKAYQRIDQCQHLQHLQIVAHQTSFRTP*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Huang et al., 2021

circRNA

Detail information of BGIOSGA033869_circ_g.1

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