Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA033869_circ_g.1 |
ID in PlantcircBase | osi_circ_003171 |
Alias | 11:16266552|16269388 |
Organism | Oryza sativa ssp. indica |
Position | chr11: 16266552-16269388 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA033869 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA033869_circ_g.2 BGIOSGA033869_circ_g.3 BGIOSGA033869_circ_g.4 BGIOSGA033869_circ_g.5 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA033869-TA:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
16268869-16266554(-) 16266678-16269285(-) 16269310-16266675(+) 16269353-16266649(+) |
Potential amino acid sequence |
MSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMA VAHGKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRV GRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDV ANVGIDLFFDMLFDSLSKKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMST PPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAH GKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRS GTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANV GIDLFFDMLFDSLSKKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPP ERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKK VSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTE GFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGID LFFDMLFDSLSKKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERV AVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKVSK NIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFA YLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFF DMLFDSLSK(-) MLQRRIWVSGGSEACLVSNNLEMLQMLALIYSLICFLIACQRSLVSNKRRRLHHTRLLLMFSHC LQHPFHVLCISR*(-) MGVADSVRTSIEALYDAIFSFCWTPNFFDKLSKSISKNRSMPTFATSPDCCSPNKLPNPLIPIS FSAT*(+) MMQSSPFVGHQTSLTSYQKAYQRIDQCQHLQHLQIVAHQTSFRTP*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |