Detail information of BGIOSGA033869_circ_g.1


General Information
CircRNA Name BGIOSGA033869_circ_g.1
ID in PlantcircBase osi_circ_003171
Alias 11:16266552|16269388
Organism Oryza sativa ssp. indica
Position chr11: 16266552-16269388  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA033869
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA033869_circ_g.2 BGIOSGA033869_circ_g.3 BGIOSGA033869_circ_g.4 BGIOSGA033869_circ_g.5
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA033869-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGAGATACAAAGTACGTGGAATGGGTGTTGCAGACAGTGTGAGAACATCAATAGAAGCCTTGTA
TGATGCAATCTTCTCCTTTTGTTGGACACCAAACTTctttgacaagctatcaaaaagcatatca
aagaatagatcaatgccaacatttgcaacatctccagattgttgctcaccaaacaagcttccga
accccctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTGACAAGCTATCAAAAAGCATATCAAAGAATAGATCAATGCCAACATTTGCAACATCTCCA
GATTGTTGCTCACCAAACAAGCTTCCGAACCCCCTGATACCCATATCCTTCTCTGCAACATGAA
AACCTTGACCAAGATCTGAATGCTCCTCAATAGCTCCAAGTCTATCCTGCAGATGGAGATATTG
AACTACAGATGAAGAATGACACAACACAATACAGATTCTGAACTCATTTAACAAAAGATATTTC
AAGGGATAATTGCCTTATTGTCATACAAAAGACCCCTTATTTTTTCTGTAAGATGCCCTATAGA
AATGTATCAGAAAATCAAACATCAGGTGCTGTGGAAGTAGTAAAAGCTACAATTTAGTTCACTT
CATTTTGCCATGGCATAAGGCTAGTCATACAAGTGGTGGTCAGGACTGAGGGCTCAGGAAGCAT
CAATACACTGAAACCTAGTAAGCATAACATACATTCCAAAGTGCCAATAATAGAAATACTGCTT
ATTAGGTGCCACCAAGACTGGTTAACTGATCTTATGTACAACAAACTATCATTAAAGGAAATTT
AGGTTATATTTCTGACTGGGCTTCCATATTTAGTATTATTGCAAATATGCTTTCAGTAACAGTC
ATCAGATGATTTGGATGCTGTGACAAGAAAATGAATATAAATAATAAAATTAGGGGCACTATGG
TAGAGCTAACCGTTGCAATCTTTGAGAGCAAAGACTTATCAGTGTAGAAGAGGTATGCGAAACC
TTCTGTGCCGGATCTTCCTACTCTACCTCGCAACTGTGAAGGAAAAACAAAGGGGTGAACTTGT
AAAATTAGGAAGATGCATTAGAAACAACACGGATAACTAGGGCACATATTACTTTTAAGTACGA
TAACAGTCTCACAGAAGGCTAAACAGAGAGGCACAGGACAGCTCATACTTTTTCAGTTCTTCGT
AGCTTATTTTGTATTTATAAATGAGAAAACTCCAGTAAGATGCTCAAAAACTATTTGCCAATGG
GCATAGTTCAACAATCAATCAAATTTATGTGCTCACATATTATCAAATATAAATGCTAAATAAC
TATGCCATAATGAGGTGCTTCTAGTTTGTTTGCTGGACAGGTGTTTTGCTGTACCCCTTCTTGG
ATTGTTGTTGTTGTTTTATCACTCTCTTATCAATGAAATAAGAGCCTTTTGCCTTTGTTTAAAA
CAAAATGCCATAAAGGAAAAGGAAAGCATATCAGAAAAACAAAGCCACCTGATATAGCTGTGCA
AGCCCAAATAGTTCAGCATACTGAACTACCATCGTGTTGGCATTTGGAATATCTATTCCACTTT
CAATGATGTGTGTGCAGACCAGAATTTTGACTTCTCCACAAGCAAATTTTTCCATAGCAAGTTG
TATGTTCTTTGAAACTTTCTGCGGGAAAAAGAATTGGCAAGAAATTTGATTATGACGAAAGCAC
CATTCGACTATGCAAATAGAACATAAATCTTGATTGTTAACCTAACATTATTCCATATATAATA
ACTAGCAACTTAAGATATAGACTTGACTGAAATTGAAGGTTGTAAGCTTTACAGAAAATAAATA
GTCATTGACAATCAAAATCAAAACGAACTATCGAAGAACAAGGTCATCGACAAGGCCCATATAG
AGTTTCCTGTTAAATTAGTTTGAACACTAATCAGCCATGCAAGGAAATCCTAACAATGATAAGA
GAGTTTCATTGGTAGAAATCCACATGTTGGACTAAAAATAGCCTATAATAAATAATAGTGAAAT
AGCATACTAAACACATCTGAAAGTTTAGTCAATAAACCTTTCCATGAGCAACAGCCATTGGAAC
ATCTGGAAGAGAATCCTTGAGAAATTGCAGCACATCATCTATTGCTGTCGCATGATGAAATAAA
TTATTAAACATAAATGCAGATTTGCAATCTAAATTATTGAATGACTTTGCATGATATTGCAGCT
TCTATATGGACAGTATAGATTGTTAGTGAACGCATCCAGCAATAGGCTAATTGTTAGAACAATC
TGCAATCACAAGTCCAACTTGCTGAGTACTAAACTGAGATTGGGAATATTGAGAAAAAAATTGT
TTTCAGGTTCATGCATCACAAGTATATGCTGTGAACAATAAGTCATCTGAAGATAACAAAGTTT
CCACCTTTTATTCGAGGAACAACATAGAAAACTTGACCACCACGTGCCAACTCAAACTTAATAG
CTGATAGAGCCCTTTCTTTGCTAAATCCTGACACGTAGGTCCTTACAGCAACTCTTTCTGGAGG
CGGCGTAGACATTAAACTGAAATCATAATACATATGCTTGTGTCATGGAAAAAAATGAAAACAA
TTCCGATATTAAATGCATCCAAGGTATTGGAGTTATGAAGAATGAATTAAATATAGAGTCAGCA
GAATAGCGCTATGATCACATTAAATGCACGAATTATCTCAAGAAAACAGTAGTAACTATTGCAA
ATGTAATAAAATGGCTCAAGTGAATCCCCTAAAAAAACTCTAGTGATTACTCGTAACCATTGTC
CACAAATTATCTCAAGAAAACAGTGGTAATAAATTAGCAATATCTCGTAATAAATTGTGGACAA
TGGTTACGAGTAATAAATTAGCAATATCTCGTCCAATATCTCGTCCAACAGAAAACAGAAGAAA
AAAATAGTATTGTTGCCATCTTACCTGGCATCACGGAAACCTGTCAACGCGAGATACAAAGTAC
GTGGAATGGGTGTTGCAGACAGTGTGAGAACATCAATAGAAGCCTTGTATGATGCAATCTTCTC
CTTTTGTTGGACACCAAACTT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 16268869-16266554(-)
16266678-16269285(-)
16269310-16266675(+)
16269353-16266649(+)
Potential amino acid sequence MSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMA
VAHGKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRV
GRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDV
ANVGIDLFFDMLFDSLSKKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMST
PPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAH
GKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRS
GTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANV
GIDLFFDMLFDSLSKKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPP
ERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKK
VSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTE
GFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGID
LFFDMLFDSLSKKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERV
AVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKVSK
NIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFA
YLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFF
DMLFDSLSK(-)
MLQRRIWVSGGSEACLVSNNLEMLQMLALIYSLICFLIACQRSLVSNKRRRLHHTRLLLMFSHC
LQHPFHVLCISR*(-)
MGVADSVRTSIEALYDAIFSFCWTPNFFDKLSKSISKNRSMPTFATSPDCCSPNKLPNPLIPIS
FSAT*(+)
MMQSSPFVGHQTSLTSYQKAYQRIDQCQHLQHLQIVAHQTSFRTP*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021