Detail information of Os10g0320400_circ_g.5


General Information
CircRNA Name Os10g0320400_circ_g.5
ID in PlantcircBase osa_circ_006456
Alias Os_ciR1078,
Organism Oryza sativa
Position chr10: 8693803-8696451  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder, find_circ, CIRI-long
Parent gene Os10g0320400
Parent gene annotation Similar to ATP synthase gamma chain, mitochondrial precursor (EC
3.6.3.14). (Os10t0320400-01)
Parent gene strand +
Alternative splicing Os10g0320400_circ_igg.1 Os10g0320400_circ_g.1 Os10g0320400_circ_g.2 Os10g0320400_circ_g.3 Os10g0320400_circ_g.4 Os10g0320400_circ_g.6 Os10g0320400_circ_g.7 Os10g0320400_circ_g.8
Support reads 19/14
Tissues root/shoot, root, seed, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0320400-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAATGCATGCAGTGAGCTTGGAGCACGTATGTCTGCCATGGACAGCTCCAGCAGAAACGCTGG
TGAAATGCTTGATCGACTCACCCTCACATACAACAGgtgtcgatgtcaagaagaatgttattgt
agccattacctctgacaagggtctttgtggtggtatcaactcaacgtcagttaaagtcagcaaa
gcactcca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 158
Transcript exons: 8693803-8693886,8696378-8696451
GTGTCGATGTCAAGAAGAATGTTATTGTAGCCATTACCTCTGACAAGGGTCTTTGTGGTGGTAT
CAACTCAACGTCAGTTAAAGCGTATGTCTGCCATGGACAGCTCCAGCAGAAACGCTGGTGAAAT
GCTTGATCGACTCACCCTCACATACAACAG

Transcript length: 194
Transcript exons: 8693803-8693890,8696346-8696451
GTGTCGATGTCAAGAAGAATGTTATTGTAGCCATTACCTCTGACAAGGGTCTTTGTGGTGGTAT
CAACTCAACGTCAGTTAAAGTCAGCTCTAGAGAATGCATGCAGTGAGCTTGGAGCACGTATGTC
TGCCATGGACAGCTCCAGCAGAAACGCTGGTGAAATGCTTGATCGACTCACCCTCACATACAAC
AG

Transcript length: 215
Transcript exons: 8693803-8693916,8696351-8696451
GTGTCGATGTCAAGAAGAATGTTATTGTAGCCATTACCTCTGACAAGGGTCTTTGTGGTGGTAT
CAACTCAACGTCAGTTAAAGTCAGCAAAGCACTCCACAAGTTGACTTCTGGAGAATGCATGCAG
TGAGCTTGGAGCACGTATGTCTGCCATGGACAGCTCCAGCAGAAACGCTGGTGAAATGCTTGAT
CGACTCACCCTCACATACAACAG

Transcript length: 604
Transcript exons: 8693803-8693916,8693996-8694123,8695826-8695948,8696041-
8696157,8696330-8696451
GTGTCGATGTCAAGAAGAATGTTATTGTAGCCATTACCTCTGACAAGGGTCTTTGTGGTGGTAT
CAACTCAACGTCAGTTAAAGTCAGCAAAGCACTCCACAAGTTGACTTCTGGACCAGAGAAAGAA
AGCAAGTATGTCATATTAGGAGAAAAGGGTAAAGTTCAACTCATTCGTGACTCCAAGGATAACA
TCGAGATGACAGTATCTGAGTTGCAGAAGAACCCTATCAACTACACACAGATTGCTGTGCTGGC
AGATGATATCTTGAAAAATGTTGAGTATGATGCTCTAAGGGTTGTTTTTAACAAGTTCCACTCG
GTCATATCATTCAAGCCCACAATGACAACCATACTTTCCCCAGAGGTTATGGAGAAAGAATCGG
AATCTGGTAAGGTTGGTGACCTGGATTCATATGAAATTGAAGGAGGTGAAACTAAATCAGAAAT
TCTTCAGAATCTTACCGAGTTCCAGTTTTCTTGTGTTATGTATAATGCTGCTCTAGAGAATGCA
TGCAGTGAGCTTGGAGCACGTATGTCTGCCATGGACAGCTCCAGCAGAAACGCTGGTGAAATGC
TTGATCGACTCACCCTCACATACAACAG

Genomic sequence GTGTCGATGTCAAGAAGAATGTTATTGTAGCCATTACCTCTGACAAGGGTCTTTGTGGTGGTAT
CAACTCAACGTCAGTTAAAGTCAGCAAAGCACTCCACAAGTTGACTTCTGGTAATACTTTGCAT
GGTTATTTTTGTTATCATTTAAACATTAGAAGATACTAAAACAAAGTTTTTGCACCTCAAATCA
GGACCAGAGAAAGAAAGCAAGTATGTCATATTAGGAGAAAAGGGTAAAGTTCAACTCATTCGTG
ACTCCAAGGATAACATCGAGATGACAGTATCTGAGTTGCAGAAGAACCCTATCAACTACACACA
GGTATGTTGTTTTCCTGAGCTTTTACTATGCTATGGGTGCACCTTTTATTATGAAATGCTATTC
ATTATTTGTGAATTTGTTTCTGAATTAAGTCTAAAGTTTGGCAATTGAAAACTGTTTTGTAGTT
TCTTATATTGTCAGTGAATTTTGCTCTCGAATTTTGAATTTTGCAAGAGAAGCATTCCTAATGT
AAAAGGAATTCTGTCATGTCACATTGGACTTCTGATTTGGAACACATTTCAATTTGTCAATGAC
TAATCTCTGTTATTATAGCCAAAATATATATACTGATTTATCAATCTAAAATTTTACCAAATCA
GACTCACTTCAGCCCACTCCGACTGTACCTTCCATTCCTTTTTCTCCATACTTTCTCCTGTTGC
TGGCAAGCTGGGGCTAAGACTTGTTACAGAAAATCACTCTTTGAGATACTCGAATGAGACATAG
ACATGATTGATCATCAAATGATGTGTTCCTCTTGTGTTTTAATAGTAACACTAGTTAGGGACTA
GGAATAAGGCAATGATGTTGGAGCTATTGCAAGCAATGAGGCAGGGGAAGGGAGCCTGGTGCCA
TCTTGGGAGGCTCCCTGTTTCAATATTTCCTTAAGCCAGCCACCACTACCTGGGTTCTCTAAGG
CTGTCACCTGTCCTGTCCTGCTGATGTGTCCACCTGTGCCACTGAATCACAGCTGCTATGTTGG
GGGCTGACACAGCTGCCATATTGGATCTGACTTGGTTTTGCTGGCCCTAGTTGGTGGGGAAAAA
GGTCTGATAAGGGGATGGAGCATCAACCTGTGCTGAAAAAGTGGGAGGAGGGTACGGTAGTCAA
GTTGCATGGCTAGTCATGGACCAATTGACAAGTCAGCCACAGAGCACGACTTGAGGGCTACAAT
TTGATTTGGGAAACTTGGAATACGAGATAAGAGGAGAGCTGTTCAGTTTTCTCCTCCATATATG
ATTAGAGGTAGCCACCGGAGTCTGAGTAAGATTAGAGGGAGCACCAATAGTTGCACACCTGCTT
TCCTCATCTGCTCCCTGTTTTTTCTGACCTCACTTCTAATGTACCAACTCAAAGGCTTGTCTTT
GACTAAGTCATGATTAGTCCTCAAGTTGGTTTAGGTCTTGAGGGATGACTAGACTGACTGTGCG
ACTAACAACCATGGCTGAAGAATAGCACATCGGCATGGAGAAATGTGAAATATAGTGATGGATC
TCATTGCTGTAGGATAAGGAATGGCACTGGTGGTGGCGCAAAGTTGTGCAGTTAGCAGAATTAG
TTTCAGCTGTGTTAATTACGTTGCAGCAGAAGTTCACGGATGTGGTATATTTCAATGAAACAAG
AGAGGATTATGGTACTAGATGATGTGTGAGAAGAAAGTGTTTTTTAGATTTAAGCTTCTAGTTA
TGCTGTAGGTTGAAATATCTCATTTTCCTTTGCAAAGAAAGATGATCTGGATCATATTCATCTT
TTGTTATGTGTGCACGCATTGCAATATATCATAGCAGCTGGTATGATTTGAACAAAATTTGCTA
ACAAACCCTGAACTGTAAAAAGTCTTATGTTGTCTGACTTCCTTGAAATGTCTTCAGGGAAGTT
TTTGTTCAGTCGATTATTATTTGGTGGCTAAAGCAGATTTCAAAAACCTAATGTGCCTATTGGA
TTGAATAGATCTCCACTGTTTTCTTTGATGATGTTTCAGATTGCTGTGCTGGCAGATGATATCT
TGAAAAATGTTGAGTATGATGCTCTAAGGGTTGTTTTTAACAAGTTCCACTCGGTCATATCATT
CAAGCCCACAATGACAACCATACTTTCCCCAGAGGTAAATATCGGTGCTGAGGACATGAATTTG
TGCTCCTATAAAGTAATATGAATGATGTGACGTTAATACTAGTGGTTTGAATTGTTTTATAGGT
TATGGAGAAAGAATCGGAATCTGGTAAGGTTGGTGACCTGGATTCATATGAAATTGAAGGAGGT
GAAACTAAATCAGAAATTCTTCAGAATCTTACCGAGTTCCAGTTTTCTTGTGTAAGTTTGTCTT
CATTAATCATATATACCTCTCAATAGATGAATTAGCTACAACTATTACAGCCACAAAATCAAGT
CGCATCCATAAGGGTAAACGTTCCCTTTGTAGAGAGCGCAATCATTCTTTTTTCAAGGTATCCT
AGTGGTATCTTATGTTTTTGCTTTGTGGCAGGTTATGTATAATGCTGCTCTAGAGAATGCATGC
AGTGAGCTTGGAGCACGTATGTCTGCCATGGACAGCTCCAGCAGAAACGCTGGTGAAATGCTTG
ATCGACTCACCCTCACATACAACAG
Conservation Information
Conserved circRNAs osi_circ_002774* osi_circ_008856
PMCS 0.466092472
Functional Information
Coding potential Y
Potential coding position 8696356-8693842(+)
8694080-8693842(+)
8694025-8696350(-)
Potential amino acid sequence MHAVSLEHVCLPWTAPAETLVKCLIDSPSHTTGVDVKKNVIVAITSDKGLCGGINSTSVKVSKA
LHKLTSGPEKESKYVILGEKGKVQLIRDSKDNIEMTVSELQKNPINYTQIAVLADDILKNVEYD
ALRVVFNKFHSVISFKPTMTTILSPEVMEKESESGKVGDLDSYEIEGGETKSEILQNLTEFQFS
CVMYNAALENACSELGARMSAMDSSSRNAGEMLDRLTLTYNRCRCQEECYCSHYL*(+)
MTVSELQKNPINYTQIAVLADDILKNVEYDALRVVFNKFHSVISFKPTMTTILSPEVMEKESES
GKVGDLDSYEIEGGETKSEILQNLTEFQFSCVMYNAALENACSELGARMSAMDSSSRNAGEMLD
RLTLTYNRCRCQEECYCSHYL*(+)
MTYLLSFSGPEVNLWSALLTLTDVELIPPQRPLSEVMATITFFLTSTPVVCEGESIKHFTSVSA
GAVHGRHTCSKLTACIL*(-)
Sponge-miRNAs osa-miR529a
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017; this study