Detail information of AT2G07050_circ_g.3


General Information
CircRNA Name AT2G07050_circ_g.3
ID in PlantcircBase ath_circ_012996
Alias NA
Organism Arabidpsis thaliana
Position chr2: 2925621-2926336  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene AT2G07050
Parent gene annotation Cycloartenol synthase
Parent gene strand +
Alternative splicing AT2G07050_circ_g.1 AT2G07050_circ_g.2 AT2G07050_circ_g.4 AT2G07050_circ_g.5 AT2G07050_circ_g.6 AT2G07050_circ_g.7 AT2G07050_circ_g.8 AT2G07050_circ_g.9 AT2G07050_circ_g.10 AT2G07050_circ_g.11 AT2G07050_circ_g.12 AT2G07050_circ_g.13 AT2G07050_circ_g.14 AT2G07050_circ_g.15 AT2G07050_circ_g.16 AT2G07050_circ_g.17
Support reads 1
Tissues aerial
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G07050.1:3
AT2G07050.2:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCTAACGATGGAGATGGAGATATGGAGAAAGGACGAGACTGGATACTAAATCATGGTGGTGCT
ACCAATATTACATCTTGGGGGAAAATGTGGCTATCGttttcaagagaaaatttgattagcccag
ttttacctcaagtcaaaatcgaagacactgatgatgttacagaggagatggtggaaaccacgtt
aaagaggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTTCAAGAGAAAATTTGATTAGCCCAGTTTTACCTCAAGTCAAAATCGAAGACACTGATGATG
TTACAGAGGAGATGGTGGAAACCACGTTAAAGAGGGGTCTAGATTTCTATTCAACTATACAGGC
ACACGACGGGCACTGGCCAGGTGATTATGGTGGTCCTATGTTTCTTCTCCCAGGACTGGTCAGT
TCATATGTTTCGTGCCTAAGCTTTCTTTTGCAAATTTTACGGAAAACTTGACAAAAACTACTTT
TGATTACAGATAATTACACTCTCCATAACTGGAGCACTGAATACAGTATTGTCGGAACAACATA
AACAAGAAATGCGCCGTTATCTCTATAATCACCAGGCAAGAAATTTCTCGTATCTTTACTATAA
TTCTGTTTCCTTGCAATGCTGTACTTGGATTTTCCATCGCAAAATAGATGTTTACACATCTTTC
TGTTTCAAAGATTTTCGTCTTCTACTTTCTAATTGTTAAACTAATTTGCACTATTGGTGGCATG
TGGTTTCAGAATGAGGACGGAGGTTGGGGTTTACATATTGAGGGCCCTAGCACCATGTTTGGGT
CTGTGTTGAACTATGTTACTCTAAGGTTGCTTGGAGAAGGACCTAACGATGGAGATGGAGATAT
GGAGAAAGGACGAGACTGGATACTAAATCATGGTGGTGCTACCAATATTACATCTTGGGGGAAA
ATGTGGCTATCG
Conservation Information
Conserved circRNAs NA
PMCS 0.22683651
Functional Information
Coding potential Y
Potential coding position 2925696-2926333(+)
Potential amino acid sequence MVETTLKRGLDFYSTIQAHDGHWPGDYGGPMFLLPGLIITLSITGALNTVLSEQHKQEMRRYLY
NHQNEDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGPNDGDGDMEKGRDWILNHGGATNITSWGK
MWLSFSRENLISPVLPQVKIEDTDDVTEEMVETTLKRGLDFYSTIQAHDGHWPGDYGGPMFLLP
GLIITLSITGALNTVLSEQHKQEMRRYLYNHQNEDGGWGLHIEGPSTMFGSVLNYVTLRLLGEG
PNDGDGDMEKGRDWILNHGGATNITSWGKMWLSFSRENLISPVLPQVKIEDTDDVTEEMVETTL
KRGLDFYSTIQAHDGHWPGDYGGPMFLLPGLIITLSITGALNTVLSEQHKQEMRRYLYNHQNED
GGWGLHIEGPSTMFGSVLNYVTLRLLGEGPNDGDGDMEKGRDWILNHGGATNITSWGKMWLSFS
RENLISPVLPQVKIEDTDDVTEEMVETTLKRGLDFYSTIQAHDGHWPGDYGGPMFLLPGLIITL
SITGALNTVLSEQHKQEMRRYLYNHQNEDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGPNDGDG
DMEKGRDWILNHGGATNITSWGKMWLS(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017