Detail information of Os07g0693500_circ_g.3


General Information
CircRNA Name Os07g0693500_circ_g.3
ID in PlantcircBase osa_circ_035448
Alias Os07circ21485/Os_ciR293
Organism Oryza sativa
Position chr7: 29508498-29510790  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, SMALT, Segemehl, circRNA_finder, find_circ
Parent gene Os07g0693500
Parent gene annotation Similar to AMP deaminase 2 (EC 3.5.4.6) (AMP deaminase isoform L
). Splice isoform Ex1A-3. (Os07t0693500-01);Hypothetical gene. (
Os07t0693500-02)
Parent gene strand +
Alternative splicing Os07g0693500_circ_g.2 Os07g0693500_circ_g.4 Os07g0693500_circ_g.5 Os07g0693500_circ_ag.1 Os07g0693500_circ_g.2 Os07g0693500_circ_g.3 Os07g0693500_circ_g.4 Os07g0693600_circ_g.1 Os07g0693600_circ_g.2 Os07g0693700_circ_g.1 Os07g0693700_circ_g.2 Os07g0693700_circ_g.3 Os07g0693700_circ_g.4 Os07g0693700_circ_g.5 Os07g0693900_circ_g.1
Support reads 7/267/18
Tissues leaf and panicle/root/shoot, root, seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os07t0693500-01:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATCATCTTGCTGCAGCATTTCTTACTTCTCATAATATTGCTCACGGGGTTAATTTAAAGAAG
TCCCCTGTCCTCCAGTATCTGTATTACCTAGCTCAGaaattcaatcttcatttgatggtcaatg
ccgatagagaactacttgctcagaaagctgcaccccatcgggacttctacaatgtcaggaaggt
tgatactc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1026
Transcript exons: 29508498-29508677,29508787-29508854,29508942-29509084,29
509260-29509321,29509452-29509565,29509758-29509898,2951
0258-29510410,29510551-29510604,29510680-29510790
AAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAGAAAGCTGCACCCC
ATCGGGACTTCTACAATGTCAGGAAGGTTGATACTCATGTTCATCACTCTGCATGCATGAATCA
GAAGCATCTGTTGAGATTTATCAAGTCCAAGTTGAGGAAAGAACCTGACGAGGTTGTGATTTTT
AGAGATGGTACCTATTTGACTCTTAAGGAGGTTTTTGAGAGTTTGGACTTGACTGGTTATGACC
TCAATGTTGATCTCTTAGATGTGCATGCCGATAAAAGTACATTCCATCGCTTTGACAAGTTCAA
TTTGAAGTATAATCCTTGTGGCCAATCCCGGCTGAGGGAGATCTTTCTTAAACAGGACAACCTT
ATTCAAGGCCGATTTCTTGCTGAATTGACAAAAGAAGTATTTTCTGATCTTGAAGCAAGTAAAT
ATCAGATGGCTGAGTATAGAATATCTATCTATGGGAGAAAGAAAAGTGAGTGGGATCAGATGGC
AAGCTGGATAGTGAATAATGAATTGTACAGCGAGAATGTTGTTTGGTTAATTCAGATTCCTCGG
ATATACAATGTATACAGGGAGATGGGAACAATCAATTCTTTCCAGAACCTCCTTGACAATATTT
TTCTGCCTCTTTTTGAAGTAACTGTTGATCCTGCTTCACATCCTCAGCTCCATGTTTTCTTGCA
ACAGGTCGTTGGGCTGGATTTAGTGGATGATGAAAGCAAACCAGAGAGACGCCCAACAAAACAC
ATGCCTACACCTGAGCAATGGACTAATGTTTTCAATCCAGCATATGCATATTATGTGTACTATT
GTTATGCTAACTTGTACACGCTGAACAAGCTTCGTGAGTCCAAGGGTATGACAACAATCAAACT
TCGTCCACACTGTGGGGAGGCTGGAGATATTGATCATCTTGCTGCAGCATTTCTTACTTCTCAT
AATATTGCTCACGGGGTTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACCTAGCTC
AG

Transcript length: 160
Transcript exons: 29508498-29508598,29510732-29510790
AAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAGAAAGCTGCACCCC
ATCGGGACTTCTACAATGTCAGGAAGGTTGATACTCACTCACGGGGTTAATTTAAAGAAGTCCC
CTGTCCTCCAGTATCTGTATTACCTAGCTCAG

Transcript length: 163
Transcript exons: 29508498-29508557,29510688-29510790
AAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAGAAAGCTGCATATT
GATCATCTTGCTGCAGCATTTCTTACTTCTCATAATATTGCTCACGGGGTTAATTTAAAGAAGT
CCCCTGTCCTCCAGTATCTGTATTACCTAGCTCAG

Transcript length: 183
Transcript exons: 29508498-29508583,29510694-29510790
AAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAGAAAGCTGCACCCC
ATCGGGACTTCTACAATGTCAGTCATCTTGCTGCAGCATTTCTTACTTCTCATAATATTGCTCA
CGGGGTTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACCTAGCTCAG

Transcript length: 187
Transcript exons: 29508498-29508627,29510734-29510790
AAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAGAAAGCTGCACCCC
ATCGGGACTTCTACAATGTCAGGAAGGTTGATACTCATGTTCATCACTCTGCATGCATGAATCA
GACACGGGGTTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACCTAGCTCAG

Transcript length: 208
Transcript exons: 29508498-29508602,29510688-29510790
AAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAGAAAGCTGCACCCC
ATCGGGACTTCTACAATGTCAGGAAGGTTGATACTCATGTTTATTGATCATCTTGCTGCAGCAT
TTCTTACTTCTCATAATATTGCTCACGGGGTTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCT
GTATTACCTAGCTCAG

Transcript length: 209
Transcript exons: 29508498-29508673,29510758-29510790
AAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAGAAAGCTGCACCCC
ATCGGGACTTCTACAATGTCAGGAAGGTTGATACTCATGTTCATCACTCTGCATGCATGAATCA
GAAGCATCTGTTGAGATTTATCAAGTCCAAGTTGAGGAAAGAACCTGACCTGTCCTCCAGTATC
TGTATTACCTAGCTCAG

Transcript length: 210
Transcript exons: 29508498-29508629,29510713-29510790
AAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAGAAAGCTGCACCCC
ATCGGGACTTCTACAATGTCAGGAAGGTTGATACTCATGTTCATCACTCTGCATGCATGAATCA
GAAGCTTACTTCTCATAATATTGCTCACGGGGTTAATTTAAAGAAGTCCCCTGTCCTCCAGTAT
CTGTATTACCTAGCTCAG

Transcript length: 210
Transcript exons: 29508498-29508635,29510719-29510790
AAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAGAAAGCTGCACCCC
ATCGGGACTTCTACAATGTCAGGAAGGTTGATACTCATGTTCATCACTCTGCATGCATGAATCA
GAAGCATCTGTCTCATAATATTGCTCACGGGGTTAATTTAAAGAAGTCCCCTGTCCTCCAGTAT
CTGTATTACCTAGCTCAG

Transcript length: 225
Transcript exons: 29508498-29508583,29510255-29510297,29510695-29510790
AAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAGAAAGCTGCACCCC
ATCGGGACTTCTACAATGTCAGCAGGTCGTTGGGCTGGATTTAGTGGATGATGAAAGCAAACCA
GCATCTTGCTGCAGCATTTCTTACTTCTCATAATATTGCTCACGGGGTTAATTTAAAGAAGTCC
CCTGTCCTCCAGTATCTGTATTACCTAGCTCAG

Transcript length: 240
Transcript exons: 29508498-29508628,29510682-29510790
AAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAGAAAGCTGCACCCC
ATCGGGACTTCTACAATGTCAGGAAGGTTGATACTCATGTTCATCACTCTGCATGCATGAATCA
GAATGGAGATATTGATCATCTTGCTGCAGCATTTCTTACTTCTCATAATATTGCTCACGGGGTT
AATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACCTAGCTCAG

Transcript length: 247
Transcript exons: 29508498-29508644,29510691-29510790
AAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAGAAAGCTGCACCCC
ATCGGGACTTCTACAATGTCAGGAAGGTTGATACTCATGTTCATCACTCTGCATGCATGAATCA
GAAGCATCTGTTGAGATTTTGATCATCTTGCTGCAGCATTTCTTACTTCTCATAATATTGCTCA
CGGGGTTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACCTAGCTCAG

Transcript length: 258
Transcript exons: 29508498-29508662,29510698-29510790
AAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAGAAAGCTGCACCCC
ATCGGGACTTCTACAATGTCAGGAAGGTTGATACTCATGTTCATCACTCTGCATGCATGAATCA
GAAGCATCTGTTGAGATTTATCAAGTCCAAGTTGAGGCTTGCTGCAGCATTTCTTACTTCTCAT
AATATTGCTCACGGGGTTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACCTAGCTC
AG

Transcript length: 264
Transcript exons: 29508498-29508654,29510684-29510790
AAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAGAAAGCTGCACCCC
ATCGGGACTTCTACAATGTCAGGAAGGTTGATACTCATGTTCATCACTCTGCATGCATGAATCA
GAAGCATCTGTTGAGATTTATCAAGTCCAGAGATATTGATCATCTTGCTGCAGCATTTCTTACT
TCTCATAATATTGCTCACGGGGTTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACC
TAGCTCAG

Transcript length: 269
Transcript exons: 29508498-29508657,29510682-29510790
AAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAGAAAGCTGCACCCC
ATCGGGACTTCTACAATGTCAGGAAGGTTGATACTCATGTTCATCACTCTGCATGCATGAATCA
GAAGCATCTGTTGAGATTTATCAAGTCCAAGTTGGAGATATTGATCATCTTGCTGCAGCATTTC
TTACTTCTCATAATATTGCTCACGGGGTTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTA
TTACCTAGCTCAG

Transcript length: 279
Transcript exons: 29508498-29508626,29510255-29510297,29510684-29510790
AAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAGAAAGCTGCACCCC
ATCGGGACTTCTACAATGTCAGGAAGGTTGATACTCATGTTCATCACTCTGCATGCATGAATCA
GCAGGTCGTTGGGCTGGATTTAGTGGATGATGAAAGCAAACCAGGAGATATTGATCATCTTGCT
GCAGCATTTCTTACTTCTCATAATATTGCTCACGGGGTTAATTTAAAGAAGTCCCCTGTCCTCC
AGTATCTGTATTACCTAGCTCAG

Transcript length: 289
Transcript exons: 29508498-29508677,29510682-29510790
AAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAGAAAGCTGCACCCC
ATCGGGACTTCTACAATGTCAGGAAGGTTGATACTCATGTTCATCACTCTGCATGCATGAATCA
GAAGCATCTGTTGAGATTTATCAAGTCCAAGTTGAGGAAAGAACCTGACGAGTGGAGATATTGA
TCATCTTGCTGCAGCATTTCTTACTTCTCATAATATTGCTCACGGGGTTAATTTAAAGAAGTCC
CCTGTCCTCCAGTATCTGTATTACCTAGCTCAG

Transcript length: 325
Transcript exons: 29508498-29508674,29510255-29510296,29510685-29510790
AAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAGAAAGCTGCACCCC
ATCGGGACTTCTACAATGTCAGGAAGGTTGATACTCATGTTCATCACTCTGCATGCATGAATCA
GAAGCATCTGTTGAGATTTATCAAGTCCAAGTTGAGGAAAGAACCTGACCAGGTCGTTGGGCTG
GATTTAGTGGATGATGAAAGCAAACCAAGATATTGATCATCTTGCTGCAGCATTTCTTACTTCT
CATAATATTGCTCACGGGGTTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACCTAG
CTCAG

Transcript length: 450
Transcript exons: 29508498-29508664,29509899-29509933,29510088-29510226,29
510682-29510790
AAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAGAAAGCTGCACCCC
ATCGGGACTTCTACAATGTCAGGAAGGTTGATACTCATGTTCATCACTCTGCATGCATGAATCA
GAAGCATCTGTTGAGATTTATCAAGTCCAAGTTGAGGAAGTCAGTGGAACTATTTACGCAGATG
CGCACTGCAGGCTTGCTGCAGCACCTAAAGCAATGCTCAGTAGGATACTTTCCTCTAACATAAG
GGCACCTCTAATCTCCTCCCATTAGTAACTTTATGCATTACTATGCCTAGTGTATGCCTTGTTA
TGTTGTGGAGCGGAGCAGTCATGGAGATATTGATCATCTTGCTGCAGCATTTCTTACTTCTCAT
AATATTGCTCACGGGGTTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACCTAGCTC
AG

Genomic sequence AAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAGAAAGCTGCACCCC
ATCGGGACTTCTACAATGTCAGGAAGGTTGATACTCATGTTCATCACTCTGCATGCATGAATCA
GAAGCATCTGTTGAGATTTATCAAGTCCAAGTTGAGGAAAGAACCTGACGAGGTGCACCTATTT
TCTTTTCATCAATCCCTGTGGTTTTTTTTCTCATGTGGAATATGAAGGTTCTTTGTCTGCTCTC
TACTTAAAAATTTCAAAAATTGCATTTGTGCAGGTTGTGATTTTTAGAGATGGTACCTATTTGA
CTCTTAAGGAGGTTTTTGAGAGTTTGGACTTGACTGGGTAACTGAAATTCTTTATGTGATGGTT
CTGTCATGTATCTTTTGATTAAGATATTTTTTAACTAACCTGCTTTTGCCACTCTGCCAGTTAT
GACCTCAATGTTGATCTCTTAGATGTGCATGCCGATAAAAGTACATTCCATCGCTTTGACAAGT
TCAATTTGAAGTATAATCCTTGTGGCCAATCCCGGCTGAGGGAGATCTTTCTTAAACAGGACAA
CCTTATTCAAGGTGCACCTTTTGTTTTGTCTTGTTTCCTACGTATTTCAGTAATCGATGCCATT
CTCGTTTTGTTATATTTTCTTTCAGTTGTCGAGAACTGTTACTCATGTTCTATGTTGACCTTAT
TCTCAGCATACCCTGTATATGTACAATTCTTTAAAATGTTGTATTGTCTTCTTAATAGGCCGAT
TTCTTGCTGAATTGACAAAAGAAGTATTTTCTGATCTTGAAGCAAGTAAATATCAGGTACTTCT
TTCTTTCTTTACCAATCTCATATTTGTGATTCTTTAAGGTGGTGTTGTTCGCTATTTGTCATGT
AACACATTGTTTACATATTGCTCTGTCTAATTATTCCTACTCTCATAATCTTCACCAGATGGCT
GAGTATAGAATATCTATCTATGGGAGAAAGAAAAGTGAGTGGGATCAGATGGCAAGCTGGATAG
TGAATAATGAATTGTACAGCGAGAATGTTGTTTGGTTAATTCAGGTTATGACACTCTCTGTTGA
TGTCGTCGTCTGCTTCTAGTCATAATTTTATCTGAGTTTTTTTTCTAAACATTCAGTAATCAAT
TCTTAAACTTTGTAAACCAAACAAACTAGTATACTCTGTGCAGGTAACTATTTTATTTTTATTT
TGCCAGAGTAGATTTACTGAAACATTGTTTAATTTTATCTGCAGATTCCTCGGATATACAATGT
ATACAGGGAGATGGGAACAATCAATTCTTTCCAGAACCTCCTTGACAATATTTTTCTGCCTCTT
TTTGAAGTAACTGTTGATCCTGCTTCACATCCTCAGCTCCATGTTTTCTTGCAACAGGTCAGTG
GAACTATTTACGCAGATGCGCACTGCAGTGCTAATATAGTACTCAATTGAATGGAGTTAAAAAA
TGTATTAATTAGAAAATATATGATATTTGAACAGTGGTATGTGAGTCTTACAAAGATTGACCTC
TTTTAGCTGTCCTATCTAGTGGAAATAGAGGGAATAACATTGATAAGTTACAAGGCTTGCTGCA
GCACCTAAAGCAATGCTCAGTAGGATACTTTCCTCTAACATAAGGGCACCTCTAATCTCCTCCC
ATTAGTAACTTTATGCATTACTATGCCTAGTGTATGCCTTGTTATGTTGTGGAGCGGAGCAGTC
ATCACCATCAATTTTGCTGCTGTTTTCTTCAGGTCGTTGGGCTGGATTTAGTGGATGATGAAAG
CAAACCAGAGAGACGCCCAACAAAACACATGCCTACACCTGAGCAATGGACTAATGTTTTCAAT
CCAGCATATGCATATTATGTGTACTATTGTTATGCTAACTTGTACACGCTGAACAAGGTATCAT
TCATTTGTCCCCAGATCTCTGCCTGTTCTTCTCCTTCAAATTCTAGTTTTCAGATTAGCTTCTC
TCTCAACATTTATGATGTCCTATCCCCTATTGGGGCTCTCTTGGTTGACTTGAGATTTTTGTGA
TGTAGCTTCGTGAGTCCAAGGGTATGACAACAATCAAACTTCGTCCACACTGTGGGGAGGTATA
TGCTAATGCACATATTTGAGTATTCATAGATTTACCCCGGAAAAGTTGCATTGATGATTCTTGT
CTTCAGGCTGGAGATATTGATCATCTTGCTGCAGCATTTCTTACTTCTCATAATATTGCTCACG
GGGTTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACCTAGCTCAG
Conservation Information
Conserved circRNAs osi_circ_007459* osi_circ_017529
PMCS 0.552525818
Functional Information
Coding potential Y
Potential coding position 29508517-29510787(+)
Potential amino acid sequence MVNADRELLAQKAAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYL
TLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFL
AELTKEVFSDLEASKYQMAEYRISIYGRKKSEWDQMASWIVNNELYSENVVWLIQIPRIYNVYR
EMGTINSFQNLLDNIFLPLFEVTVDPASHPQLHVFLQQVVGLDLVDDESKPERRPTKHMPTPEQ
WTNVFNPAYAYYVYYCYANLYTLNKLRESKGMTTIKLRPHCGEAGDIDHLAAAFLTSHNIAHGV
NLKKSPVLQYLYYLAQKFNLHLMVNADRELLAQKAAPHRDFYNVRKVDTHVHHSACMNQKHLLR
FIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNP
CGQSRLREIFLKQDNLIQGRFLAELTKEVFSDLEASKYQMAEYRISIYGRKKSEWDQMASWIVN
NELYSENVVWLIQIPRIYNVYREMGTINSFQNLLDNIFLPLFEVTVDPASHPQLHVFLQQVVGL
DLVDDESKPERRPTKHMPTPEQWTNVFNPAYAYYVYYCYANLYTLNKLRESKGMTTIKLRPHCG
EAGDIDHLAAAFLTSHNIAHGVNLKKSPVLQYLYYLAQKFNLHLMVNADRELLAQKAAPHRDFY
NVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDL
LDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKEVFSDLEASKYQMAE
YRISIYGRKKSEWDQMASWIVNNELYSENVVWLIQIPRIYNVYREMGTINSFQNLLDNIFLPLF
EVTVDPASHPQLHVFLQQVVGLDLVDDESKPERRPTKHMPTPEQWTNVFNPAYAYYVYYCYANL
YTLNKLRESKGMTTIKLRPHCGEAGDIDHLAAAFLTSHNIAHGVNLKKSPVLQYLYYLAQKFNL
HLMVNADRELLAQKAAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGT
YLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGR
FLAELTKEVFSDLEASKYQMAEYRISIYGRKKSEWDQMASWIVNNELYSENVVWLIQIPRIYNV
YREMGTINSFQNLLDNIFLPLFEVTVDPASHPQLHVFLQQVVGLDLVDDESKPERRPTKHMPTP
EQWTNVFNPAYAYYVYYCYANLYTLNKLRESKGMTTIKLRPHCGEAGDIDHLAAAFLTSHNIAH
GVNLKKSPVLQYLYYLAQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA