Detail information of BGIOSGA026446_circ_g.5


General Information
CircRNA Name BGIOSGA026446_circ_g.5
ID in PlantcircBase osi_circ_007459
Alias 7:27622044|27624336
Organism Oryza sativa ssp. indica
Position chr7: 27622044-27624336  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA026446
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA026446_circ_g.1 BGIOSGA026446_circ_g.2 BGIOSGA026446_circ_g.3 BGIOSGA026446_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA026446-TA:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATCATCTTGCTGCAGCATTTCTTACTTCTCATAATATTGCTCACGGGGTTAATTTAAAGAAG
TCCCCTGTCCTCCAGTATCTGTATTACCTAGCTCAGaaattcaatcttcatttgatggtcaatg
ccgatagagaactacttgctcagaaagctgcaccccatcgggacttctacaatgtcaggaaggt
tgatactc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAATTCAATCTTCATTTGATGGTCAATGCCGATAGAGAACTACTTGCTCAGAAAGCTGCACCCC
ATCGGGACTTCTACAATGTCAGGAAGGTTGATACTCATGTTCATCACTCTGCATGCATGAATCA
GAAGCATCTGTTGAGATTTATCAAGTCCAAGTTGAGGAAAGAACCTGACGAGGTGCACCTATTT
TCTTTTCATCAATCCCTGTGGTTTTTTTTCTCATGTGGAATATGAAGGTTCTTTGTCTGCTCTC
TACTTAAAAATTTCAAAAATTGCATTTGTGCAGGTTGTGATTTTTAGAGATGGTACCTATTTGA
CTCTTAAGGAGGTTTTTGAGAGTTTGGACTTGACTGGGTAACTGAAATTCTTTGTGTGATGGTT
CTGTCATGTATCTTTTGATTAAGATTTTTTTTAACTAACCTGCTTTTGCCACTCTGCCAGTTAT
GACCTCAATGTTGATCTCTTAGATGTGCATGCCGATAAAAGTACATTCCATCGCTTTGACAAGT
TCAATTTGAAGTATAATCCTTGTGGCCAATCCCGGCTGAGGGAGATCTTTCTTAAACAGGACAA
CCTTATTCAAGGTGCACCTTTTGTTTTGTCTTGTTTCCTACGTATTTCAGTAATCGATGCCATT
CTCGTTTTGTTATATTTTCTTTCAGTTGTCGAGAACTGTTACTCATGTTCTATGTTGACCTTAT
TCTCAGCATACCCTGTATATGTACAATTCTTTAAAATGTTGTATTGTCTTCTTAATAGGCCGAT
TTCTTGCTGAATTGACAAAAGAAGTATTTTCTGATCTTGAAGCAAGTAAATATCAGGTACTTCT
TTCTTTCTTTACCAATCTCATATTTGTGATTCTTTAAGGTGGTGTTGTTCGCTATTTGTCATGT
AACACATTGTTTACATATTGCTCTGTCTAATTATTCCTACTCTCATAATCTTCACCAGATGGCT
GAGTATAGAATATCTATCTATGGGAGAAAGAAAAGTGAGTGGGATCAGATGGCAAGCTGGATAG
TGAATAATGAATTGTACAGCGAGAATGTTGTTTGGTTAATTCAGGTTATGACACTCTCTGTTGA
TGTCGTCATCTGCTTCTAGTCATAATTTTATCTGAGTTTTTTTTCTAAACATTCAGTAATCAAT
TCTTAAACTTTGTAAACCAAACAAACTAGTATACTCTGTGCAGGTAACTATTTTATTTTTATTT
TGCCAGAGTAGATTTACTGAAACATTGTTTAATTTTATCTGCAGATTCCTCGGATATACAATGT
ATACAGGGAGATGGGAACAATCAATTCTTTCCAGAACCTCCTTGACAATATTTTTCTGCCTCTT
TTTGAAGTAACTGTTGATCCTGCTTCACATCCTCAGCTCCATGTTTTCTTGCAACAGGTCAGTG
GAACTATTTACGCAGATGCACACTGCAGTGCTAATATAGTACTCAATTGAATGGAGTTAAAAAA
TGTATTAATTAGAAAATATATGATATTTGAACAGTGGTATGTGAGTCTTACAAAGATTGACCTC
TTTTAGCTGTCCTATCTAGTGGAAATAGAGGGAATAACATTGATAAGTTACAAGGCTTGCTGCA
GCACCTAAAGCAATGCTCAGTAGGATACTTTCCTCTAACATAAGGGCACCTCTAATCTCCTCCC
ATTAGTAACTTTATGCATTACTATGCCTAGTGTATGCCTTGTTATGTTGTGGAGCGGAGCAGTC
ATCACCATCAATTTTGCTGCTGTTTTCTTCAGGTCGTTGGGCTGGATTTAGTGGATGATGAAAG
CAAACCAGAGAGACGCCCAACAAAACACATGCCTACACCTGAGCAATGGACTAATGTTTTCAAT
CCAGCATATGCATATTATGTGTACTATTGTTATGCTAACTTGTACACGCTGAACAAGGTATCAT
TCATTTGTCCCCAGATCTCTGCCTGTTCTTCTCCTTCAAATTCTAGTTTTCAGATTAGCTTCTC
TCTCAACATTTATGATGTCCTATCCCCTATTGGGGCTCTCTTGGTTGACTTGAGATTTTTGTGA
TGTAGCTTCGTGAGTCCAAGGGTATGACAACAATCAAACTTCGTCCACACTGTGGGGAGGTATA
TGCTAATGCACATATTTGAGTATTCATAGATTTACCCCGGAAAAGTTGCATTGATGATTCTTGT
CTTCAGGCTGGAGATATTGATCATCTTGCTGCAGCATTTCTTACTTCTCATAATATTGCTCACG
GGGTTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACCTAGCTCAG
Conservation Information
Conserved circRNAs osa_circ_035448* osa_circ_035447
PMCS
Functional Information
Coding potential Y
Potential coding position 27622063-27624333(+)
Potential amino acid sequence MVNADRELLAQKAAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYL
TLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFL
AELTKEVFSDLEASKYQMAEYRISIYGRKKSEWDQMASWIVNNELYSENVVWLIQIPRIYNVYR
EMGTINSFQNLLDNIFLPLFEVTVDPASHPQLHVFLQQVVGLDLVDDESKPERRPTKHMPTPEQ
WTNVFNPAYAYYVYYCYANLYTLNKLRESKGMTTIKLRPHCGEAGDIDHLAAAFLTSHNIAHGV
NLKKSPVLQYLYYLAQKFNLHLMVNADRELLAQKAAPHRDFYNVRKVDTHVHHSACMNQKHLLR
FIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNP
CGQSRLREIFLKQDNLIQGRFLAELTKEVFSDLEASKYQMAEYRISIYGRKKSEWDQMASWIVN
NELYSENVVWLIQIPRIYNVYREMGTINSFQNLLDNIFLPLFEVTVDPASHPQLHVFLQQVVGL
DLVDDESKPERRPTKHMPTPEQWTNVFNPAYAYYVYYCYANLYTLNKLRESKGMTTIKLRPHCG
EAGDIDHLAAAFLTSHNIAHGVNLKKSPVLQYLYYLAQKFNLHLMVNADRELLAQKAAPHRDFY
NVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDL
LDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKEVFSDLEASKYQMAE
YRISIYGRKKSEWDQMASWIVNNELYSENVVWLIQIPRIYNVYREMGTINSFQNLLDNIFLPLF
EVTVDPASHPQLHVFLQQVVGLDLVDDESKPERRPTKHMPTPEQWTNVFNPAYAYYVYYCYANL
YTLNKLRESKGMTTIKLRPHCGEAGDIDHLAAAFLTSHNIAHGVNLKKSPVLQYLYYLAQKFNL
HLMVNADRELLAQKAAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGT
YLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGR
FLAELTKEVFSDLEASKYQMAEYRISIYGRKKSEWDQMASWIVNNELYSENVVWLIQIPRIYNV
YREMGTINSFQNLLDNIFLPLFEVTVDPASHPQLHVFLQQVVGLDLVDDESKPERRPTKHMPTP
EQWTNVFNPAYAYYVYYCYANLYTLNKLRESKGMTTIKLRPHCGEAGDIDHLAAAFLTSHNIAH
GVNLKKSPVLQYLYYLAQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021