Detail information of AT2G03150_circ_g.3


General Information
CircRNA Name AT2G03150_circ_g.3
ID in PlantcircBase ath_circ_012650
Alias At_ciR1283, AT2G03150_C1
Organism Arabidpsis thaliana
Position chr2: 952466-952954  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, circRNA_finder, find_circ, CIRI2
Parent gene AT2G03150
Parent gene annotation ATP/GTP-binding protein family
Parent gene strand +
Alternative splicing AT2G03150_circ_g.1 AT2G03150_circ_g.2 AT2G03150_circ_g.4 AT2G03150_circ_g.5 AT2G03150_circ_g.6 AT2G03150_circ_g.7 AT2G03150_circ_g.8
Support reads 4/17
Tissues leaf/root, leaf, aerial, inflorescences, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03150.2:1
AT2G03150.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGAAGGCAGTATGGTGAACAATCAAGCTCTTATCTCGGTAGGGAGTTGCAAAATGAACCAACT
AGGCGATATGCTGATCCATCTAATTTTGCTCGCCAGcttggatctggctatcctggaagttcag
tgagtggtggcgcagaaggaggctctcagatttctttgagttctcgccatccatcaattacagg
tgctcctc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 489
Transcript exons: 952466-952954
CTTGGATCTGGCTATCCTGGAAGTTCAGTGAGTGGTGGCGCAGAAGGAGGCTCTCAGATTTCTT
TGAGTTCTCGCCATCCATCAATTACAGGTGCTCCTCAAGAGACTGACATTGGTGGTGGATACAG
ATCTCATTTATCTACAGCTGCTAGTCATTACGGAACACAATATGGCTCTGTGTATGGATCAACT
TCTCTTAGCAGCTCTCAGCCTTTAAGCACCAATGGTTTAGGTTCATCAGTTTTGGATAACCGCT
CGGGATATGTCCCTACTTTACCTGATTCACCAAAGTTTGCATCTGGAAGCTATTTGTCTCCCTC
GAGCCATGGTTATGGTCAAAAGACGGACGATTTGTATTCCGATAAGCTGTCTGGTTACATTCCC
GTTGATAGAAGGCAGTATGGTGAACAATCAAGCTCTTATCTCGGTAGGGAGTTGCAAAATGAAC
CAACTAGGCGATATGCTGATCCATCTAATTTTGCTCGCCAG

Genomic sequence CTTGGATCTGGCTATCCTGGAAGTTCAGTGAGTGGTGGCGCAGAAGGAGGCTCTCAGATTTCTT
TGAGTTCTCGCCATCCATCAATTACAGGTGCTCCTCAAGAGACTGACATTGGTGGTGGATACAG
ATCTCATTTATCTACAGCTGCTAGTCATTACGGAACACAATATGGCTCTGTGTATGGATCAACT
TCTCTTAGCAGCTCTCAGCCTTTAAGCACCAATGGTTTAGGTTCATCAGTTTTGGATAACCGCT
CGGGATATGTCCCTACTTTACCTGATTCACCAAAGTTTGCATCTGGAAGCTATTTGTCTCCCTC
GAGCCATGGTTATGGTCAAAAGACGGACGATTTGTATTCCGATAAGCTGTCTGGTTACATTCCC
GTTGATAGAAGGCAGTATGGTGAACAATCAAGCTCTTATCTCGGTAGGGAGTTGCAAAATGAAC
CAACTAGGCGATATGCTGATCCATCTAATTTTGCTCGCCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.721890483
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description response to drought stress