Detail information of AT2G03150_circ_g.4


General Information
CircRNA Name AT2G03150_circ_g.4
ID in PlantcircBase ath_circ_012651
Alias NA
Organism Arabidpsis thaliana
Position chr2: 952466-953167  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene AT2G03150
Parent gene annotation ATP/GTP-binding protein family
Parent gene strand +
Alternative splicing AT2G03150_circ_g.1 AT2G03150_circ_g.2 AT2G03150_circ_g.3 AT2G03150_circ_g.5 AT2G03150_circ_g.6 AT2G03150_circ_g.7 AT2G03150_circ_g.8
Support reads 9
Tissues root, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03150.2:2
AT2G03150.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTTGTATGATCGCATTGATCAAGCATCGCTTCTCCGAGGAGAACAATTATTAAAAATGCAGTC
GCTTCATACCTCTTCTGTTGATGCAGGTGTCAACAGcttggatctggctatcctggaagttcag
tgagtggtggcgcagaaggaggctctcagatttctttgagttctcgccatccatcaattacagg
tgctcctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGGATCTGGCTATCCTGGAAGTTCAGTGAGTGGTGGCGCAGAAGGAGGCTCTCAGATTTCTT
TGAGTTCTCGCCATCCATCAATTACAGGTGCTCCTCAAGAGACTGACATTGGTGGTGGATACAG
ATCTCATTTATCTACAGCTGCTAGTCATTACGGAACACAATATGGCTCTGTGTATGGATCAACT
TCTCTTAGCAGCTCTCAGCCTTTAAGCACCAATGGTTTAGGTTCATCAGTTTTGGATAACCGCT
CGGGATATGTCCCTACTTTACCTGATTCACCAAAGTTTGCATCTGGAAGCTATTTGTCTCCCTC
GAGCCATGGTTATGGTCAAAAGACGGACGATTTGTATTCCGATAAGCTGTCTGGTTACATTCCC
GTTGATAGAAGGCAGTATGGTGAACAATCAAGCTCTTATCTCGGTAGGGAGTTGCAAAATGAAC
CAACTAGGCGATATGCTGATCCATCTAATTTTGCTCGCCAGGTGCGCCTACTCTCATATTTTTA
AGAGAAAATCTTATGAATTTGGTTGGTTTCTGTTCAATGTTGTTACAATTGGCTTGATGATACT
CGTTATTATATGATTTTGGCAGACTGACTTGTATGATCGCATTGATCAAGCATCGCTTCTCCGA
GGAGAACAATTATTAAAAATGCAGTCGCTTCATACCTCTTCTGTTGATGCAGGTGTCAACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.167278051
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017