Detail information of AT2G03150_circ_g.2


General Information
CircRNA Name AT2G03150_circ_g.2
ID in PlantcircBase ath_circ_012649
Alias 2:952313-953167
Organism Arabidpsis thaliana
Position chr2: 952313-953167  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G03150
Parent gene annotation ATP/GTP-binding protein family
Parent gene strand +
Alternative splicing AT2G03150_circ_g.1 AT2G03150_circ_g.3 AT2G03150_circ_g.4 AT2G03150_circ_g.5 AT2G03150_circ_g.6 AT2G03150_circ_g.7 AT2G03150_circ_g.8
Support reads 2
Tissues seedling
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03150.1:3
AT2G03150.2:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTTGTATGATCGCATTGATCAAGCATCGCTTCTCCGAGGAGAACAATTATTAAAAATGCAGTC
GCTTCATACCTCTTCTGTTGATGCAGGTGTCAACAGatgcatagagatatgtattcttcaagag
gcactggctacggtcaacagcaatacggttcgcaatctggttattctcagaatgtaagatcatc
aatttcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGCATAGAGATATGTATTCTTCAAGAGGCACTGGCTACGGTCAACAGCAATACGGTTCGCAAT
CTGGTTATTCTCAGAATGTAAGATCATCAATTTCAATTGAAACCAAATTATGCTTAATTATGCT
TAATTTATGTGTAATTGTTATGTAGCTTGGATCTGGCTATCCTGGAAGTTCAGTGAGTGGTGGC
GCAGAAGGAGGCTCTCAGATTTCTTTGAGTTCTCGCCATCCATCAATTACAGGTGCTCCTCAAG
AGACTGACATTGGTGGTGGATACAGATCTCATTTATCTACAGCTGCTAGTCATTACGGAACACA
ATATGGCTCTGTGTATGGATCAACTTCTCTTAGCAGCTCTCAGCCTTTAAGCACCAATGGTTTA
GGTTCATCAGTTTTGGATAACCGCTCGGGATATGTCCCTACTTTACCTGATTCACCAAAGTTTG
CATCTGGAAGCTATTTGTCTCCCTCGAGCCATGGTTATGGTCAAAAGACGGACGATTTGTATTC
CGATAAGCTGTCTGGTTACATTCCCGTTGATAGAAGGCAGTATGGTGAACAATCAAGCTCTTAT
CTCGGTAGGGAGTTGCAAAATGAACCAACTAGGCGATATGCTGATCCATCTAATTTTGCTCGCC
AGGTGCGCCTACTCTCATATTTTTAAGAGAAAATCTTATGAATTTGGTTGGTTTCTGTTCAATG
TTGTTACAATTGGCTTGATGATACTCGTTATTATATGATTTTGGCAGACTGACTTGTATGATCG
CATTGATCAAGCATCGCTTCTCCGAGGAGAACAATTATTAAAAATGCAGTCGCTTCATACCTCT
TCTGTTGATGCAGGTGTCAACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.154596267
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020