Detail information of AT2G03150_circ_g.1


General Information
CircRNA Name AT2G03150_circ_g.1
ID in PlantcircBase ath_circ_012648
Alias 2:952313-952954
Organism Arabidpsis thaliana
Position chr2: 952313-952954  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G03150
Parent gene annotation ATP/GTP-binding protein family
Parent gene strand +
Alternative splicing AT2G03150_circ_g.2 AT2G03150_circ_g.3 AT2G03150_circ_g.4 AT2G03150_circ_g.5 AT2G03150_circ_g.6 AT2G03150_circ_g.7 AT2G03150_circ_g.8
Support reads 2
Tissues flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03150.1:2
AT2G03150.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGAAGGCAGTATGGTGAACAATCAAGCTCTTATCTCGGTAGGGAGTTGCAAAATGAACCAACT
AGGCGATATGCTGATCCATCTAATTTTGCTCGCCAGatgcatagagatatgtattcttcaagag
gcactggctacggtcaacagcaatacggttcgcaatctggttattctcagaatgtaagatcatc
aatttcaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 570
Transcript exons: 952313-952393,952466-952954
ATGCATAGAGATATGTATTCTTCAAGAGGCACTGGCTACGGTCAACAGCAATACGGTTCGCAAT
CTGGTTATTCTCAGAATCTTGGATCTGGCTATCCTGGAAGTTCAGTGAGTGGTGGCGCAGAAGG
AGGCTCTCAGATTTCTTTGAGTTCTCGCCATCCATCAATTACAGGTGCTCCTCAAGAGACTGAC
ATTGGTGGTGGATACAGATCTCATTTATCTACAGCTGCTAGTCATTACGGAACACAATATGGCT
CTGTGTATGGATCAACTTCTCTTAGCAGCTCTCAGCCTTTAAGCACCAATGGTTTAGGTTCATC
AGTTTTGGATAACCGCTCGGGATATGTCCCTACTTTACCTGATTCACCAAAGTTTGCATCTGGA
AGCTATTTGTCTCCCTCGAGCCATGGTTATGGTCAAAAGACGGACGATTTGTATTCCGATAAGC
TGTCTGGTTACATTCCCGTTGATAGAAGGCAGTATGGTGAACAATCAAGCTCTTATCTCGGTAG
GGAGTTGCAAAATGAACCAACTAGGCGATATGCTGATCCATCTAATTTTGCTCGCCAG

Genomic sequence ATGCATAGAGATATGTATTCTTCAAGAGGCACTGGCTACGGTCAACAGCAATACGGTTCGCAAT
CTGGTTATTCTCAGAATGTAAGATCATCAATTTCAATTGAAACCAAATTATGCTTAATTATGCT
TAATTTATGTGTAATTGTTATGTAGCTTGGATCTGGCTATCCTGGAAGTTCAGTGAGTGGTGGC
GCAGAAGGAGGCTCTCAGATTTCTTTGAGTTCTCGCCATCCATCAATTACAGGTGCTCCTCAAG
AGACTGACATTGGTGGTGGATACAGATCTCATTTATCTACAGCTGCTAGTCATTACGGAACACA
ATATGGCTCTGTGTATGGATCAACTTCTCTTAGCAGCTCTCAGCCTTTAAGCACCAATGGTTTA
GGTTCATCAGTTTTGGATAACCGCTCGGGATATGTCCCTACTTTACCTGATTCACCAAAGTTTG
CATCTGGAAGCTATTTGTCTCCCTCGAGCCATGGTTATGGTCAAAAGACGGACGATTTGTATTC
CGATAAGCTGTCTGGTTACATTCCCGTTGATAGAAGGCAGTATGGTGAACAATCAAGCTCTTAT
CTCGGTAGGGAGTTGCAAAATGAACCAACTAGGCGATATGCTGATCCATCTAATTTTGCTCGCC
AG
Conservation Information
Conserved circRNAs NA
PMCS 0.21397515
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020