Detail information of BGIOSGA017382_circ_igg.7


General Information
CircRNA Name BGIOSGA017382_circ_igg.7
ID in PlantcircBase osi_circ_000544
Alias NA
Organism Oryza sativa ssp. indica
Position chr4: 34169370-34174124  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method DCC
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA017382_circ_g.1 BGIOSGA017382_circ_g.2 BGIOSGA017382_circ_g.3 BGIOSGA017382_circ_g.4 BGIOSGA017382_circ_igg.1 BGIOSGA017382_circ_igg.2 BGIOSGA017382_circ_igg.3 BGIOSGA017382_circ_igg.4 BGIOSGA017382_circ_igg.5 BGIOSGA017382_circ_igg.6 BGIOSGA017382_circ_igg.8
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   AC-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAATAGAAGATGAGCTATGCTTAGATTATGGATTGTATAGTACCCGCCCATTGAGGCTGGGCTG
GGTCCTCCAGAATATATACCCCTGCATGTGTCACTGcatccatacttatacctcctatataaat
gcatgctgcaaggcaggagacatgcaggtacgagaattttgcattggaatacttagtttcttac
ttattgta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGGAGACATGCAGGTACGAGAA
TTTTGCATTGGAATACTTAGTTTCTTACTTATTGTAAGTTGTAACCGTGTAGTGGAGATAGCCT
GATTTTGATAGGATATGTGCACATGTTTTAAGGTAGCTGACCAAAATATTTTACAATGCCATGA
CTATATGCCCGAATTATTTCAGCACTACAGATTTACCTAGGTGGCTACATATTCAAATTTGGCA
CTTGTGAATGGAGAAGTATTCTCTTGGGGCCTTCTTGTAATCTATCCAATTTTTTTTTTTATAA
AATGATTTGTTTGTAGAGAGCAGAAAAGGTGATTGAAGAAATGGTAGATGTTGGACTAAAACCT
AATGTCAAGACATATACTACCTTGATTAAAGGTTGGGCAAGAGTGTCACTTCCAGACAGGGCAT
TGAAATGCTTTGAGGAGATGAAACTTGCTGGGTTGAAACCTGATGAGGCTTCTTATCATTGCTT
GGTGACTTCACTTCTGTCAAGGGCAACTGTAATGGAGGGAAGTACCTACACAGGAATCATTAGT
GTCTGTAGAGAAATGTCTGAGAATGATTTGACTGTTGATCTTCGCACTGCTGTTCACTGGTCTA
GATGGCTTCACAAGATTGAGAGGACTGGAGGGGCACTAACAGAAGCGCTTCAGAGAATATTTCC
TCCTGATTGGAATTCATTAGAATTTTTAGGAGAGCCATCCAGTTCTATAAGCATGGGGGAGTCT
GATGATTACAGTGATTCAGATTTTAGCGGTGATGAAGATGAGGATCATAATATTGATGATAGCT
GAAAAACTCTAGATTCCAGAGCCTGTTTTTCTTGTTCTGTGCCCTCACTTTTTGTCCTTTGGTT
CTGCCAGAGTGGATGACCGAACAAGGTATTATGTGTTGAACTGTTAATATGTGTTTAATATGCC
ATTTCCTTTTGGTGATGTTTCTAAAAAGCACACATAATAATTCTTGAAAAGGAGTCTGCCAACA
ATCATTTGTCATTACTCATTGCCACCTTTTGGAGTTCCTGGAAATTGCATTGAACTAACACTCT
TTGTTTCCATGGCAGCAATGTCTTTGATCAAACTGTTCCCTCACATTCAGACACCAGTGGCTTG
TGGACTATCCAAGAGCGTTTGGAATCTTATAGTGCAATAAGCGTGAGCTGGCTGGCCTCTGCTG
CGTTTCTTCAAGAGCAACAGTCAGTAACAGTTCTACTGGGACTGAAGACACAGGCTGTCAATGC
AACAGACGAAGCTTACTCAGTTATGCGTGTAGCTGTACATATCAATGGCTGGCACAGGTAAATA
TTCTTGAGATATTGACAGATTCAATTTTTGTTTCTCTCCATCCTTTCAGTATAGTCCAACTTGA
TATAAAATCCAATTCCATATATGTGTATAAATGCAAGTAAAGCTATACCACGTTACCAGTTACC
ACCCACACCCCTTCTTGGCTTGCCTTTTGTAGTGTGCCATGTGAAATGTACCGACCATGATAGA
GCCTGCGTGCCCATTTTTCAACATCCAAATGTTAGGAGTGGTAGGAGCGCTTATAGGCATATGC
TTGAACACCACTTTGATTGGCAGAATTTTGTAGGGGCAGCACAGTGTGCCTACAAGGTTTGGTT
TTGTAACCACATCCCTGGACAAGCCGTTCGATGCTTATTTGAATACTAGTACGACAAACCAATC
TGTGTCGTGGTGCTCGTAAAAGCTGAGATCATTTAAACTTGTAAGTAGAAAGTTGGACGAGCTT
TTTTCTCTTGGAGAGAATGCACAGGCCCTCATGTTCTTTGTTTTGATGATCTTAAAAAAACCAT
AGTCAAGGTAAATAGGAGCAAAGATTGGTATCTTGCACATTATTGCGGGTTGGGCTTATTCAAT
GGGGGAATTCCCTATTGAAACTGAAGTACAAGTCCAATCAAGTGCTAGATGATGACTGTTTTCT
CATTTAAGGTTTGGCATCTTCCAGTACAGCAGCTTCAATCAAATGGGCCTTAACGTAGCTCAGC
CCGATTCAATATTACTTGGAATTGCACGCCTCTGTCCAAGCTGAAAGCTTTTACTAGTAGGACA
CTTGAATGCCTGCACAAGACGGCATTAATGCTGTGCTTATGAGCCCGATTTCTTGAGACTGGTG
TTGAGTTTGTGCGTATGTGTGTGATATGAGCTGCGAATCTTAGCTGGCCGGTATCTTTCATTGA
ATCGAAAGTGGCCTCCCCATTCAAGTCTTGCCCACAAGATAAAACAGTGCTTCATTTATGCCTG
TTATTTAATTTTGCTTAGCTGCATCTCGCTTCTCCATTCATACACCATAAATTCTTTCAAAGAA
ATCTTGATTGTATTAGTGTTGTATTAGGCCTTTGTTCGGAGAGAAAAAATTTCATAGTACCAAT
TACCCCCTCCATCCCAAAATATAACAACTTCTATCACTAAGAGTTTGTTCCAAAATAAAATAAC
TTATCCACCAACATTCTCTTCCTAACTAATCATAACACTGCACCATTCAATTTTTCCATCTACC
TCCACTTCTCAACCAATCACAATATCATCATATTTAATTCTATCTACTTTCTTACTAATTGTGT
TTAATCCTAAAATTTCTTATGTTCTGGGACGGAGATAGTAGCATGTATGAACAGTATGAAGTAC
TACAATGTAAATATTTTGCCTGAAACATGCTTTGTTTTTTTTCATGCCAAATAATTCAGTGTGA
TATTTGGTAATTCATACAGTATTCCTTCCTTTTATACCCACTCTAGTTTCAAATACTTGTCACT
AGTTACTACTTACTACTAGCTTTTTTCCCTAAAAAAGTTACTAGCTTTTTAGCTTTGATCACTC
GCCCTTTTTGCAAAAATGAAACATATGTATACTTAAAATATGTTGCATTAGCGATGTGTGTTCC
ATAAATACAACCAGACAACTTTCACTAATAATAACTTAATCTTTAAAAGTTATTAATGGTTAAA
GGTGAAACATTATGGTTAACATTGACAAGTAAATAAAGATGGAAGGAATACATATTTTCTAAAG
ATAGGTACGGTCCTACAGGCTTTGTCCAGCAAAAAAAAAAGGACAGTTCTGCAGAACAAAAATA
TTTTGGTGGAGTTTTTAAACATTGCATCCAACAGAAGCCTTATGGTATTTTTTTTTTCTATGAT
AAGAGAATTTATTCTGGTTTTTTACTTAAAAGAAGCTGCAACCAATTATTATAGAATTTGCAGA
ATGAATAGCTGCGGATTACAAAATTATGAAACACAAAGTAGAAAACTACTAAGAATACCATCCT
TAAAACAAAGATCTACATCTATGGTTAGTCAGAGGGAAGTGGATTCTAATCCCTCGAGGGGATA
TCCCCTCGTATATCTTTTTCTTCCAAATTCAATGCAAATAGTTGTGAAAAATTCTGAAAAAAAT
TAACAATGTAGAGTATAATGATACCTACTAGTCCACCAAAATTCATGTTCAAATTCGATCTACA
CATCGAGAAACAAAAAAGACAAATTTAGATATAAACAGTACGTTACTATTCATACGCTGAATGT
CTTGTTTATATCTCGACGTGGGAGTTGAGTTTGGACTTAAGATTTTGTGAAGTTGTATATATGT
GTTGTATGAATGTTGTCAAATTTTTCCAGAATTTTTCATAACCGTTTAGATGGTTTTTGAGCAA
ACGAGCGAACATCCCCTCGAGGGATTAGAATAGTTTCCCTTAGTCAGAGTATGTTTAACGTTGT
TTGCTCCAATGGTTATAAGTTGTACAGTCTCTGAAACCAGCAGCCGATCTTTGTCGATCGAATT
TCGATCCCATCACTGCCGATGAACTGACATTAAACCAAAACGGAAGAAGCCTTATGGTATGGGT
GGAGAATGAAAATAGGAAAGAGACAGGAAACATCTTTATTCCTAAACTAGTACTCCCTCCGTCC
CATAATATAAGTGATTTTAGAGGTATGTGACGTTTCCTCGGACTACGAATCTAGATCATATCCC
TCTAAAATCCCTTATATTATGGGATGGAGAGAGTAACAATTAATAGGAAATGACACAACAGGAT
AGCAGAAACTGAAAACTTCCTTTCATTTTCTGGGGAAAGAAGGGGAAATTTGACGTTTGGAGCT
CATCTGTAGTGGAGATTTAACTGTTCCAAAAGCTTAGAATAGTGGCAGCTATGTTGATACAGCA
CTATGTTATCTTTTCTCAGCAGACGTGCTGGTAAAAAAAATTTAGTGCGAAGGGACCATTGCTA
GTTGGCCCTTACTTTTATATTACTGTAACTGATCCAGAATTAAATTTCTACCTATTTTCTTTGA
AAGAGCACGAAAGCACATATCAATAATTTTGGTAATATTATTCATTTATCATAATCTATTTTGC
TATACGCTCCGACCACTGCACAATGACAGTATTTATTTCGCAGAGAGGCCAACAGGAGCTATAA
AATGATGTTCCGATTGCTGTTAATTACCTGGAAACTGAACTGTACTGGGCGAGTGATGAAGGTA
GGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAGGTGTAATTTCCTCTCTAGT
CTCTAGAATTACAAGGCAAGGTATATATTTTTAACGTTTTTGTTTATGAATAGAAGATGAGCTA
TGCTTAGATTATGGATTGTATAGTACCCGCCCATTGAGGCTGGGCTGGGTCCTCCAGAATATAT
ACCCCTGCATGTGTCACTG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019