Detail information of EPlOSAG00000049343_circ_igg.37


General Information
CircRNA Name EPlOSAG00000049343_circ_igg.37
ID in PlantcircBase osa_circ_043229
Alias NA
Organism Oryza sativa
Position chr10: 19040486-19040782  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRI-long
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000049343_circ_igg.1 EPlOSAG00000049343_circ_igg.2 EPlOSAG00000010307_circ_g.1 EPlOSAG00000049343_circ_g.1 EPlOSAG00000049343_circ_g.2 EPlOSAG00000049343_circ_g.3 EPlOSAG00000049343_circ_g.4 EPlOSAG00000049343_circ_g.5 EPlOSAG00000049343_circ_g.6 EPlOSAG00000049343_circ_g.7 EPlOSAG00000049343_circ_g.8 EPlOSAG00000049343_circ_g.9 EPlOSAG00000049343_circ_g.10 EPlOSAG00000049343_circ_g.11 EPlOSAG00000049343_circ_g.12 EPlOSAG00000049343_circ_g.13 EPlOSAG00000049343_circ_g.14 EPlOSAG00000049343_circ_g.15 EPlOSAG00000049343_circ_g.16 EPlOSAG00000049343_circ_g.17 EPlOSAG00000049343_circ_g.18 EPlOSAG00000049343_circ_g.19 EPlOSAG00000049343_circ_g.20 EPlOSAG00000049343_circ_g.21 EPlOSAG00000049343_circ_g.22 EPlOSAG00000049343_circ_g.23 EPlOSAG00000049343_circ_g.24 EPlOSAG00000049343_circ_g.25 EPlOSAG00000049343_circ_g.26 EPlOSAG00000049343_circ_g.27 EPlOSAG00000049343_circ_g.28 EPlOSAG00000049343_circ_g.29 EPlOSAG00000049343_circ_g.30 EPlOSAG00000049343_circ_g.31 EPlOSAG00000049343_circ_g.32 EPlOSAG00000049343_circ_g.33 EPlOSAG00000049343_circ_g.34 EPlOSAG00000049343_circ_g.35 EPlOSAG00000049343_circ_g.36 EPlOSAG00000049343_circ_g.38 EPlOSAG00000049343_circ_g.39 EPlOSAG00000049343_circ_g.40 EPlOSAG00000049343_circ_g.41 EPlOSAG00000049343_circ_g.42 EPlOSAG00000049343_circ_g.43 EPlOSAG00000049343_circ_g.44 EPlOSAG00000049343_circ_g.45 EPlOSAG00000049343_circ_g.46 EPlOSAG00000049343_circ_g.47 EPlOSAG00000049343_circ_g.48 EPlOSAG00000049343_circ_g.49 EPlOSAG00000049343_circ_g.50 EPlOSAG00000049343_circ_g.51 EPlOSAG00000049343_circ_g.52 EPlOSAG00000049343_circ_g.53 EPlOSAG00000049343_circ_g.54 EPlOSAG00000049343_circ_g.55 EPlOSAG00000049343_circ_g.56 EPlOSAG00000049343_circ_g.57 EPlOSAG00000049343_circ_g.58 EPlOSAG00000049343_circ_g.59 EPlOSAG00000049343_circ_g.60 EPlOSAG00000049343_circ_g.61 EPlOSAG00000049343_circ_g.62 EPlOSAG00000049343_circ_g.63 EPlOSAG00000049343_circ_g.64 EPlOSAG00000049343_circ_g.65 EPlOSAG00000049343_circ_g.66 EPlOSAG00000049343_circ_g.67 EPlOSAG00000049343_circ_g.68 EPlOSAG00000049343_circ_g.69 EPlOSAG00000049343_circ_g.70 EPlOSAG00000049343_circ_g.71 EPlOSAG00000049343_circ_g.72 EPlOSAG00000049343_circ_g.73 EPlOSAG00000049343_circ_g.74 EPlOSAG00000049343_circ_g.75 EPlOSAG00000049343_circ_g.76 EPlOSAG00000049343_circ_g.77 EPlOSAG00000049343_circ_g.78 EPlOSAG00000049343_circ_g.79 EPlOSAG00000049343_circ_g.80 EPlOSAG00000049343_circ_g.81 EPlOSAG00000049343_circ_g.82 EPlOSAG00000049343_circ_g.83 EPlOSAG00000049343_circ_ag.1 EPlOSAG00000049343_circ_g.2 EPlOSAG00000049343_circ_g.3 EPlOSAG00000049343_circ_g.4 EPlOSAG00000049343_circ_g.5 EPlOSAG00000049343_circ_g.6 EPlOSAG00000049343_circ_g.7 EPlOSAG00000049343_circ_g.8 EPlOSAG00000049343_circ_g.9 EPlOSAG00000049343_circ_g.10 EPlOSAG00000049343_circ_g.11 EPlOSAG00000049343_circ_g.12 EPlOSAG00000049343_circ_g.13 EPlOSAG00000049343_circ_g.14 EPlOSAG00000049343_circ_g.15 EPlOSAG00000049343_circ_g.16 EPlOSAG00000049343_circ_g.17 EPlOSAG00000049343_circ_g.18 EPlOSAG00000049343_circ_g.19 EPlOSAG00000049343_circ_g.20 EPlOSAG00000049343_circ_g.21 EPlOSAG00000049343_circ_g.22 EPlOSAG00000049343_circ_g.23 EPlOSAG00000049343_circ_g.24 EPlOSAG00000049343_circ_g.25 EPlOSAG00000049343_circ_g.26 EPlOSAG00000049343_circ_g.27 EPlOSAG00000049343_circ_g.28 EPlOSAG00000049343_circ_g.29 EPlOSAG00000049343_circ_g.30 EPlOSAG00000049343_circ_g.31 EPlOSAG00000049343_circ_g.32 EPlOSAG00000049343_circ_g.33 EPlOSAG00000049343_circ_g.34 EPlOSAG00000049343_circ_g.35 EPlOSAG00000049343_circ_g.36 EPlOSAG00000049343_circ_g.37 EPlOSAG00000049343_circ_g.38 EPlOSAG00000049343_circ_g.39 EPlOSAG00000049343_circ_g.40 EPlOSAG00000049343_circ_g.41 EPlOSAG00000049343_circ_g.42 EPlOSAG00000049343_circ_g.43 EPlOSAG00000049343_circ_g.44 EPlOSAG00000049343_circ_g.45 EPlOSAG00000049343_circ_g.46 EPlOSAG00000049343_circ_g.47 EPlOSAG00000049343_circ_g.48 EPlOSAG00000049343_circ_g.49 EPlOSAG00000049343_circ_g.50 EPlOSAG00000049343_circ_g.51 EPlOSAG00000049343_circ_igg.52 Os10g0499600_circ_g.1 Os10g0499600_circ_g.2 Os10g0500300_circ_g.1 Os10g0500300_circ_g.2 Os10g0500600_circ_g.1 Os10g0500600_circ_g.2 Os10g0500700_circ_g.1 Os10g0500700_circ_g.2 Os10g0500700_circ_g.3 Os10g0500700_circ_g.4 Os10g0500700_circ_g.5 Os10g0500700_circ_g.6 Os10g0500700_circ_g.7 Os10g0500700_circ_g.8 Os10g0501000_circ_ag.1 Os10g0501500_circ_g.1 Os10g0501500_circ_g.2 EPlOSAG00000049332_circ_g.1 EPlOSAG00000049332_circ_g.2 EPlOSAG00000049332_circ_g.3 EPlOSAG00000049332_circ_g.4 EPlOSAG00000049332_circ_g.5 EPlOSAG00000049332_circ_g.6 EPlOSAG00000049332_circ_g.7 EPlOSAG00000049332_circ_g.8 EPlOSAG00000049332_circ_g.9 EPlOSAG00000049332_circ_g.10 EPlOSAG00000049332_circ_g.11 EPlOSAG00000049332_circ_g.12 EPlOSAG00000049332_circ_g.13 EPlOSAG00000049332_circ_g.14 EPlOSAG00000049332_circ_g.15 EPlOSAG00000049332_circ_g.16 EPlOSAG00000049332_circ_g.17 EPlOSAG00000049332_circ_g.18 EPlOSAG00000049332_circ_g.19 EPlOSAG00000049332_circ_g.20 EPlOSAG00000049332_circ_g.21 EPlOSAG00000049332_circ_g.22 EPlOSAG00000049332_circ_g.23 EPlOSAG00000049332_circ_g.24 EPlOSAG00000049332_circ_g.25 EPlOSAG00000049332_circ_g.26 EPlOSAG00000049332_circ_g.27 EPlOSAG00000049332_circ_g.28 EPlOSAG00000049332_circ_g.29 EPlOSAG00000049332_circ_g.30 EPlOSAG00000049332_circ_g.31 EPlOSAG00000049332_circ_g.32 EPlOSAG00000049332_circ_g.33 EPlOSAG00000049332_circ_g.34 EPlOSAG00000049332_circ_g.35 EPlOSAG00000049332_circ_g.36 EPlOSAG00000049332_circ_g.37 EPlOSAG00000049332_circ_g.38 EPlOSAG00000049332_circ_g.39 EPlOSAG00000049332_circ_g.40 EPlOSAG00000049332_circ_g.41 EPlOSAG00000049332_circ_g.42 EPlOSAG00000049332_circ_g.43 EPlOSAG00000049332_circ_g.44 EPlOSAG00000049332_circ_g.45 EPlOSAG00000049332_circ_g.46 EPlOSAG00000049332_circ_g.47 EPlOSAG00000049332_circ_g.48 EPlOSAG00000049332_circ_g.49 EPlOSAG00000049332_circ_g.50 EPlOSAG00000049332_circ_g.51 EPlOSAG00000049332_circ_g.52 EPlOSAG00000049332_circ_g.53 EPlOSAG00000049332_circ_g.54 EPlOSAG00000049332_circ_g.55 EPlOSAG00000049332_circ_g.56 EPlOSAG00000049332_circ_g.57 EPlOSAG00000049332_circ_g.58 EPlOSAG00000049332_circ_g.59 EPlOSAG00000049332_circ_g.60 EPlOSAG00000049332_circ_g.61 EPlOSAG00000049332_circ_g.62 EPlOSAG00000049332_circ_g.63 EPlOSAG00000049332_circ_g.64 EPlOSAG00000049332_circ_g.65 EPlOSAG00000049332_circ_g.66 EPlOSAG00000049332_circ_g.67
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGGCGCAGACCCCAAGCGCAAACGACCAGGCATCCAACACCACCTTATTGCCCCCGCTCGGGT
GACAAGCCAACGCTACCTGGCTCGGCGAGTCAGCAGgcacttgggccggaagcgggccagggct
gcagcggcccgttatccttccaccgttggaagcgggcggtactcgctgctctgtgaaaccagcc
tcacgcaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 297
Transcript exons: 19040486-19040782
GCACTTGGGCCGGAAGCGGGCCAGGGCTGCAGCGGCCCGTTATCCTTCCACCGTTGGAAGCGGG
CGGTACTCGCTGCTCTGTGAAACCAGCCTCACGCAATACCCGCCACTCTAGGTGCAGGGACGCT
CGAGCCTTCGCCCAGGCGCCCCACACACGCTACGCAACTTGGAACGGGCGGGCCGCATAGTGCA
AACCACAGGCGCAGACCCCAAGCGCAAACGACCAGGCATCCAACACCACCTTATTGCCCCCGCT
CGGGTGACAAGCCAACGCTACCTGGCTCGGCGAGTCAGCAG

Genomic sequence GCACTTGGGCCGGAAGCGGGCCAGGGCTGCAGCGGCCCGTTATCCTTCCACCGTTGGAAGCGGG
CGGTACTCGCTGCTCTGTGAAACCAGCCTCACGCAATACCCGCCACTCTAGGTGCAGGGACGCT
CGAGCCTTCGCCCAGGCGCCCCACACACGCTACGCAACTTGGAACGGGCGGGCCGCATAGTGCA
AACCACAGGCGCAGACCCCAAGCGCAAACGACCAGGCATCCAACACCACCTTATTGCCCCCGCT
CGGGTGACAAGCCAACGCTACCTGGCTCGGCGAGTCAGCAG
Conservation Information
Conserved circRNAs osi_circ_002886* osi_circ_008568 osi_circ_013545 osi_circ_013544
ecr_circ_000420
PMCS 0.625766695
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study