Plant Circular RNA Database

Detail information of BGIOSGA009895_circ_ig.1

			
						 General Information
					
						CircRNA Name
						BGIOSGA009895_circ_ig.1
					
						ID in PlantcircBase
						osi_circ_013544
					
						Alias
						Chr03:32313141_32313421(MH63RS2), Chr03:32064544_32064823(ZS97RS2), Chr03:32313141_32313421(MH63RS2)
					
						Organism
						
							Oryza sativa ssp. indica						
					
						Position
						
							chr3: 33638071-33638350  JBrowse»						
					
						Reference genome
						
							Oryza_indica.ASM465v1.42						
					
						Type  
						
							ig-circRNA							
									
						Identification method
						CIRI2, find_circ, find_circ
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							BGIOSGA009895_circ_ig.2 BGIOSGA009895_circ_ig.3 BGIOSGA009895_circ_ig.4 BGIOSGA009895_circ_ig.5 BGIOSGA009895_circ_ig.6 BGIOSGA009895_circ_ig.7 BGIOSGA009895_circ_ig.8 						
					
						Support reads
						NA
					
						Tissues
						root, leaf, panicle
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-CA							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	BGIOSGA009895_circ_ig.1
ID in PlantcircBase	osi_circ_013544
Alias	Chr03:32313141_32313421(MH63RS2), Chr03:32064544_32064823(ZS97RS2), Chr03:32313141_32313421(MH63RS2)
Organism	Oryza sativa ssp. indica
Position	chr3: 33638071-33638350 JBrowse»
Reference genome	Oryza_indica.ASM465v1.42
Type	ig-circRNA
Identification method	CIRI2, find_circ, find_circ
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	BGIOSGA009895_circ_ig.2 BGIOSGA009895_circ_ig.3 BGIOSGA009895_circ_ig.4 BGIOSGA009895_circ_ig.5 BGIOSGA009895_circ_ig.6 BGIOSGA009895_circ_ig.7 BGIOSGA009895_circ_ig.8
Support reads	NA
Tissues	root, leaf, panicle
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-CA The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							TGGCAGGCATTGCGTGAGGCTGGCTTCACAGAGCAGCGAATACTGTCCGCTTCCAACGGTGGAA
GGATAACGGGCCGCCGCACTGCTGGCCCGCTTGGGTcctccagccgagctcagcagcgcgagct
tgtaacccgagcgggggcattaaggtggtgtggacgttgccgtatggctgcgggcctgggttgg
cagtgcca

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							CCTCCAGCCGAGCTCAGCAGCGCGAGCTTGTAACCCGAGCGGGGGCATTAAGGTGGTGTGGACG
TTGCCGTATGGCTGCGGGCCTGGGTTGGCAGTGCCATAGATGGCCCGCCCGTTCCAAGTTGCGT
AGTTGGGCCGGCGGGGCTTGAGCGAAAGCTCTGGCCTCACGTTTCCCTAGAGTGGCAGGCATTG
CGTGAGGCTGGCTTCACAGAGCAGCGAATACTGTCCGCTTCCAACGGTGGAAGGATAACGGGCC
GCCGCACTGCTGGCCCGCTTGGGT

Sequences
Splice junction sequence	TGGCAGGCATTGCGTGAGGCTGGCTTCACAGAGCAGCGAATACTGTCCGCTTCCAACGGTGGAA GGATAACGGGCCGCCGCACTGCTGGCCCGCTTGGGTcctccagccgagctcagcagcgcgagct tgtaacccgagcgggggcattaaggtggtgtggacgttgccgtatggctgcgggcctgggttgg cagtgcca
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CCTCCAGCCGAGCTCAGCAGCGCGAGCTTGTAACCCGAGCGGGGGCATTAAGGTGGTGTGGACG TTGCCGTATGGCTGCGGGCCTGGGTTGGCAGTGCCATAGATGGCCCGCCCGTTCCAAGTTGCGT AGTTGGGCCGGCGGGGCTTGAGCGAAAGCTCTGGCCTCACGTTTCCCTAGAGTGGCAGGCATTG CGTGAGGCTGGCTTCACAGAGCAGCGAATACTGTCCGCTTCCAACGGTGGAAGGATAACGGGCC GCCGCACTGCTGGCCCGCTTGGGT

			
				
						 Conservation Information
					

				
						Conserved circRNAs
						
							osa_circ_021407 osa_circ_021406 osa_circ_031555 osa_circ_021436 
osa_circ_021427 osa_circ_021405 osa_circ_021429 osa_circ_021437 
osa_circ_021441 osa_circ_021430 osa_circ_021387 osa_circ_021444 
osa_circ_021423 osa_circ_031543 osa_circ_031535 osa_circ_031519 
osa_circ_021453 osa_circ_021450 osa_circ_021458 osa_circ_021457 
osa_circ_021415* osa_circ_021480 osa_circ_021404 osa_circ_031511 
osa_circ_021479 osa_circ_021478 osa_circ_021408 osa_circ_021470 
osa_circ_031548 osa_circ_031542 osa_circ_031534 osa_circ_031506 
osa_circ_031508 osa_circ_021484 osa_circ_031533 osa_circ_007392 
osa_circ_007401 osa_circ_007403 osa_circ_031532 osa_circ_031531 
osa_circ_007391 osa_circ_007498 osa_circ_007383 osa_circ_031499 
osa_circ_043229 osa_circ_007400 osa_circ_043232 osa_circ_007509 
osa_circ_007417 osa_circ_007511 osa_circ_007502 osa_circ_007377 
osa_circ_007378 osa_circ_007380 osa_circ_007503 osa_circ_007373 
osa_circ_007372 osa_circ_007358 osa_circ_007350 osa_circ_007349 
osa_circ_007507 osa_circ_007359 						
					

						PMCS
						
					

			
		

Conservation Information
Conserved circRNAs	osa_circ_021407 osa_circ_021406 osa_circ_031555 osa_circ_021436 osa_circ_021427 osa_circ_021405 osa_circ_021429 osa_circ_021437 osa_circ_021441 osa_circ_021430 osa_circ_021387 osa_circ_021444 osa_circ_021423 osa_circ_031543 osa_circ_031535 osa_circ_031519 osa_circ_021453 osa_circ_021450 osa_circ_021458 osa_circ_021457 osa_circ_021415* osa_circ_021480 osa_circ_021404 osa_circ_031511 osa_circ_021479 osa_circ_021478 osa_circ_021408 osa_circ_021470 osa_circ_031548 osa_circ_031542 osa_circ_031534 osa_circ_031506 osa_circ_031508 osa_circ_021484 osa_circ_031533 osa_circ_007392 osa_circ_007401 osa_circ_007403 osa_circ_031532 osa_circ_031531 osa_circ_007391 osa_circ_007498 osa_circ_007383 osa_circ_031499 osa_circ_043229 osa_circ_007400 osa_circ_043232 osa_circ_007509 osa_circ_007417 osa_circ_007511 osa_circ_007502 osa_circ_007377 osa_circ_007378 osa_circ_007380 osa_circ_007503 osa_circ_007373 osa_circ_007372 osa_circ_007358 osa_circ_007350 osa_circ_007349 osa_circ_007507 osa_circ_007359
PMCS

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhou et al., 2021

circRNA

Detail information of BGIOSGA009895_circ_ig.1

Address

Any questions?

Supported by