Detail information of BGIOSGA015163_circ_g.5


General Information
CircRNA Name BGIOSGA015163_circ_g.5
ID in PlantcircBase osi_circ_014320
Alias Chr04:20404933_20405297(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 17658881-17659245  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA015163
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015163_circ_igg.1 BGIOSGA015163_circ_g.1 BGIOSGA015163_circ_g.2 BGIOSGA015163_circ_g.3 BGIOSGA015163_circ_g.4 BGIOSGA015163_circ_g.6
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-CA
Number of exons covered BGIOSGA015163-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATCAGGAATGGTCTTGGATGGGATAAGTGATGGCTCAAAATCATCAGCAGAAAGGAAGTTTGC
CTTCTTCTTCTCTTCCCCATCAACCAAAATTCTCACccacaaccaggagcctcttcacacttgg
ggttgtcaatctttggtgcttcccattctccatcctcctcatcatcccagtcttcaggcttgtt
agcctccg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCACAACCAGGAGCCTCTTCACACTTGGGGTTGTCAATCTTTGGTGCTTCCCATTCTCCATCCT
CCTCATCATCCCAGTCTTCAGGCTTGTTAGCCTCCGGATCATCAATTTCCTCTGGCTCATCATC
CAGCCACCCCTCTGGCTTTGTGGCCTCTTCGTCCTCAATTTCCATGGGGGCATCCTCATCCCAG
TCATCAGGCTTCACAGCATCTGGATCAGGGATTTTAGCTCTCTCATCCCAGTCTTCTGGCTTTT
TGTCATCAGGATCAGGAATGGTCTTGGATGGGATAAGTGATGGCTCAAAATCATCAGCAGAAAG
GAAGTTTGCCTTCTTCTTCTCTTCCCCATCAACCAAAATTCTCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021