Detail information of BGIOSGA015163_circ_g.6


General Information
CircRNA Name BGIOSGA015163_circ_g.6
ID in PlantcircBase osi_circ_005436
Alias 4:17659494|17660666
Organism Oryza sativa ssp. indica
Position chr4: 17659494-17660666  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA015163
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015163_circ_igg.1 BGIOSGA015163_circ_g.1 BGIOSGA015163_circ_g.2 BGIOSGA015163_circ_g.3 BGIOSGA015163_circ_g.4 BGIOSGA015163_circ_g.5
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA015163-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGCATCCCCTGCAACCCCCCAAGCACACCCGCTAAACCCACAGATCTCGATGCGGCGGTAAGC
ATACCTTTGTAGTCGTCCTTCCCGGAGAGAACCCACctccacactcaaggccactctgaagcct
cacttcaaactgcaggacaacagtcccatccttcaaagtaacaggctcatcaagctccttgatt
atggcata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCACACTCAAGGCCACTCTGAAGCCTCACTTCAAACTGCAGGACAACAGTCCCATCCTTCAA
AGTAACAGGCTCATCAAGCTCCTTGATTATGGCATATTTCTTGGCCTTCTCACTAACAAGCAGG
CCATAGTCTTCATGTCCATCACTCTTTTCGTGCTTCCATACACCTGCAAACCACAGTAAGTACA
TCACCATTTAAGCCATCTTATGTGCGCTATAAAGAACCGATTGAAAAAACATAAATTTTTAATT
GAGGTAGAAAATTAGCGTAATCTTACACTGGCAGATAAAATGAAAAGTAGATATGTTTACTGCA
AACTGTACAAGCTAGACATGCCTTTCAATTTCACGACTTAGCATATGGAGAATTTTTGAAGTAA
AGATGAAAGAACAAAACGCCACAAGTGGCAACAGCATACATGACAGCTTTCTTCATTTCAAAAT
TCAAATAACCTCATGTACCATCAGGTCAATACAGAAGGAATTACACAAAATGCTGTCCAGGGGA
GCACGCGGATGCCATTACGATATGTTCACGAGGAACAGGTAGTGAGGCTACTCATATATAAATA
AGCTGGCAACGTCCACAGGATCAACATATACTACAAACTTTAAATGCAATTTAGTTAAAGCATA
TTTACGATAATCCTATAAGAGCAGGAACAAAATTAAAGTAAGCCACATCGCAACGGCTAGTTGA
TTATTAGCGTTGTGTGTACTAGTACTACCTAAGGGAAAAAAAACAGTGCAGCATGAAAAATTGA
AGTGTGCAGACGCTCACAGGGTCCACGACACAGACCAGCATATCGTGACGCCGCAATCGCATGA
GCCAATTCACGGAATCACAGTCCCCTACACTACAGATGTTACTACTACTGATTAGCTAGCTGGT
TAGATCCGATCTACCAAAAGATGAAATGCATCTGCTGGATCTCGACCATGTGTGCATCTGTGGA
TCTCGATGCGAACTATGCGATTGACACACTATCATTCTCGCAAGGATGCGCACAAACCCAAACC
GTCTCATGTTACAAGCAAGCAAAGCAGAGCAAGAATCCCATGAACAGATCAGCATCCCCTGCAA
CCCCCCAAGCACACCCGCTAAACCCACAGATCTCGATGCGGCGGTAAGCATACCTTTGTAGTCG
TCCTTCCCGGAGAGAACCCAC
Conservation Information
Conserved circRNAs osa_circ_023713*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021