Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | BGIOSGA015163_circ_g.2 |
ID in PlantcircBase | osi_circ_005434 |
Alias | 4:17658535|17659664 |
Organism | Oryza sativa ssp. indica |
Position | chr4: 17658535-17659664 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA015163 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA015163_circ_igg.1 BGIOSGA015163_circ_g.1 BGIOSGA015163_circ_g.3 BGIOSGA015163_circ_g.4 BGIOSGA015163_circ_g.5 BGIOSGA015163_circ_g.6 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA015163-TA:1 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
17659415-17659586(-) 17659634-17658802(+) |
Potential amino acid sequence |
MFGPDKCGSTNKVHFILKHKNPKTGKYVEHHLKFPPSVPYDKLSHVYTAILKPDNEVRILVDGE EKKKANFLSADDFEPSLIPSKTIPDPDDKKPEDWDERAKIPDPDAVKPDDWDEDAPMEIEDEEA TKPEGWLDDEPEEIDDPEANKPEDWDDEEDGEWEAPKIDNPKCEEAPGCGEWKRPMKQNPAYKG KWHAPLIDNPNYKGIWKPQEIPNPEYFELDKPDSDPIAAIGIEIWTMQDGILFDNILIADDEKV ATSILEKTWKPKYEVEKEKEKAEEAAAAAGDGLSEFQVYGSTKRVMDMKTMACLLVRRPRNMP* (-) MSITLFVLPYTWNSERPSPAAAAASSAFSFSFSTSYLGFQVFSRIEVATFSSSAIKMLSNRMPS CIVQISIPIAAIGSESGLSSSKYSGLGISWGFQIPL*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Huang et al., 2021 |