Detail information of BGIOSGA015163_circ_g.2


General Information
CircRNA Name BGIOSGA015163_circ_g.2
ID in PlantcircBase osi_circ_005434
Alias 4:17658535|17659664
Organism Oryza sativa ssp. indica
Position chr4: 17658535-17659664  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA015163
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015163_circ_igg.1 BGIOSGA015163_circ_g.1 BGIOSGA015163_circ_g.3 BGIOSGA015163_circ_g.4 BGIOSGA015163_circ_g.5 BGIOSGA015163_circ_g.6
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA015163-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCTCATCAAGCTCCTTGATTATGGCATATTTCTTGGCCTTCTCACTAACAAGCAGGCCATAGT
CTTCATGTCCATCACTCTTTTCGTGCTTCCATACACctggaactcagaaagaccatcacctgct
gccgctgctgcctcctcagccttctccttctccttctctacttcgtacttgggcttccaagtct
tctccagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGAACTCAGAAAGACCATCACCTGCTGCCGCTGCTGCCTCCTCAGCCTTCTCCTTCTCCTTC
TCTACTTCGTACTTGGGCTTCCAAGTCTTCTCCAGGATAGAAGTGGCAACCTTCTCATCATCAG
CGATCAAAATGTTGTCAAACAGGATGCCATCTTGCATCGTCCAGATCTCAATCCCAATAGCGGC
AATCGGATCAGAGTCAGGCTTGTCAAGCTCAAAGTACTCAGGGTTGGGGATCTCTTGGGGCTTC
CAGATTCCTTTGTAGTTGGGGTTGTCGATAAGAGGCGCATGCCACTTGCCCTTGTAAGCAGGGT
TCTGCTTCATCGGCCTCTTCCACTCACCACAACCAGGAGCCTCTTCACACTTGGGGTTGTCAAT
CTTTGGTGCTTCCCATTCTCCATCCTCCTCATCATCCCAGTCTTCAGGCTTGTTAGCCTCCGGA
TCATCAATTTCCTCTGGCTCATCATCCAGCCACCCCTCTGGCTTTGTGGCCTCTTCGTCCTCAA
TTTCCATGGGGGCATCCTCATCCCAGTCATCAGGCTTCACAGCATCTGGATCAGGGATTTTAGC
TCTCTCATCCCAGTCTTCTGGCTTTTTGTCATCAGGATCAGGAATGGTCTTGGATGGGATAAGT
GATGGCTCAAAATCATCAGCAGAAAGGAAGTTTGCCTTCTTCTTCTCTTCCCCATCAACCAAAA
TTCTCACCTCATTATCAGGCTTCAAGATAGCCGTGTAGACATGAGAGAGCTTATCATATGGGAC
AGAAGGTGGGAACTTGAGGTGGTGTTCAACATACTTGCCAGTCTTGGGGTTCTTGTGCTTAAGG
ATGAAATGCACCTTGTTAGTTGATCCACATTTGTCAGGACCAAACATAATAGTGTAAGGAGTCT
CATTATCAAACTCCTTGGCATCCCATGCAGCATCCTGAGGACGAATGTACTTAAGATATGCACC
TCCACACTCAAGGCCACTCTGAAGCCTCACTTCAAACTGCAGGACAACAGTCCCATCCTTCAAA
GTAACAGGCTCATCAAGCTCCTTGATTATGGCATATTTCTTGGCCTTCTCACTAACAAGCAGGC
CATAGTCTTCATGTCCATCACTCTTTTCGTGCTTCCATACAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 17659415-17659586(-)
17659634-17658802(+)
Potential amino acid sequence MFGPDKCGSTNKVHFILKHKNPKTGKYVEHHLKFPPSVPYDKLSHVYTAILKPDNEVRILVDGE
EKKKANFLSADDFEPSLIPSKTIPDPDDKKPEDWDERAKIPDPDAVKPDDWDEDAPMEIEDEEA
TKPEGWLDDEPEEIDDPEANKPEDWDDEEDGEWEAPKIDNPKCEEAPGCGEWKRPMKQNPAYKG
KWHAPLIDNPNYKGIWKPQEIPNPEYFELDKPDSDPIAAIGIEIWTMQDGILFDNILIADDEKV
ATSILEKTWKPKYEVEKEKEKAEEAAAAAGDGLSEFQVYGSTKRVMDMKTMACLLVRRPRNMP*
(-)
MSITLFVLPYTWNSERPSPAAAAASSAFSFSFSTSYLGFQVFSRIEVATFSSSAIKMLSNRMPS
CIVQISIPIAAIGSESGLSSSKYSGLGISWGFQIPL*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021