Detail information of BGIOSGA015163_circ_g.1


General Information
CircRNA Name BGIOSGA015163_circ_g.1
ID in PlantcircBase osi_circ_005433
Alias 4:17657971|17658675
Organism Oryza sativa ssp. indica
Position chr4: 17657971-17658675  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA015163
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015163_circ_igg.1 BGIOSGA015163_circ_g.2 BGIOSGA015163_circ_g.3 BGIOSGA015163_circ_g.4 BGIOSGA015163_circ_g.5 BGIOSGA015163_circ_g.6
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered BGIOSGA015163-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCAGCCTTCTCCTTCTCCTTCTCTACTTCGTACTTGGGCTTCCAAGTCTTCTCCAGGATAGA
AGTGGCAACCTTCTCATCATCAGCGATCAAAATGTTctgcttcggactcggtagactttggttt
tttgacctcggctacgggcttcacaggagcctagggaatgcaaatcttacgatcagccattgtt
gtttaact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCTTCGGACTCGGTAGACTTTGGTTTTTTGACCTCGGCTACGGGCTTCACAGGAGCCTAGGG
AATGCAAATCTTACGATCAGCCATTGTTGTTTAACTACCAAACGAGGAGAGCGGAAGCATATGT
ATGTTGTGAGAGTAACTTACCGCTGGCTTCTTGCCGCCGAACAGGATCCTGAAGAGCACAGTCA
CAAAGACGACAACGATGGAGACCAGAATTCCAATGGTGATGTTGGGCTGCTTCTCTCCCTTCTC
AATTACATCCTGTGAAGGGAAGACGAAGGTAAGATGTCACCTTCCAGAAGGATAAACCTAACAG
CTAGTAATCCACCGTAAGAGCTTTGAACACAAAAGAAGTCACAGAGGATAGAAATTCTTACAAT
GATCTTAGTCTTGTAGGGTTCCAAGAATGGAATGTCAGCGAGTTTGTACAGAACGTCAAAGATC
TTCTTCTGCAATGTGCATGGCAACTCAGTTACTCACAACATGAAGCCAGTATATTCTACATGTT
GATGGATAAACTAACAAACATACAGCAGAGGAATATTGGAAGAATATATTACCTGGAACTCAGA
AAGACCATCACCTGCTGCCGCTGCTGCCTCCTCAGCCTTCTCCTTCTCCTTCTCTACTTCGTAC
TTGGGCTTCCAAGTCTTCTCCAGGATAGAAGTGGCAACCTTCTCATCATCAGCGATCAAAATGT
T
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021