Detail information of Zm00001d032708_circ_g.4


General Information
CircRNA Name Zm00001d032708_circ_g.4
ID in PlantcircBase zma_circ_000816
Alias circ244
Organism Zea mays
Position chr1: 235656459-235657077  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI
Parent gene Zm00001d032708
Parent gene annotation Serine/threonine protein phosphatase 2A regulatory subunit B''al
pha
Parent gene strand -
Alternative splicing Zm00001d032708_circ_g.1 Zm00001d032708_circ_g.2 Zm00001d032708_circ_g.3
Support reads 7
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d032708_T014:3
Zm00001d032708_T015:3
Zm00001d032708_T012:3
Zm00001d032708_T026:3
Zm00001d032708_T019:3
Zm00001d032708_T003:3
Zm00001d032708_T010:3
Zm00001d032708_T024:3
Zm00001d032708_T017:3
Zm00001d032708_T011:3
Zm00001d032708_T007:3
Zm00001d032708_T004:3
Zm00001d032708_T001:3
Zm00001d032708_T018:3
Zm00001d032708_T005:3
Zm00001d032708_T006:3
Zm00001d032708_T008:3
Zm00001d032708_T002:3
Zm00001d032708_T022:3
Zm00001d032708_T009:3
Zm00001d032708_T020:3
Zm00001d032708_T021:3
Zm00001d032708_T025:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGAAGGTAGAGAACTACTTGAAGCAGCATTTGTGCTAGCAGAGCTTCCAGCAACATTAAGCAC
AGCACCAGTCTTTGCATCATCAATCAAAGACTTCACccttgagacagttctagtgcattcaaca
tcgattttcttgaaaaggacactagacaagaatgaaggaagtttacatatgtccttcgtgaccg
atctgaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGAGACAGTTCTAGTGCATTCAACATCGATTTTCTTGAAAAGGACACTAGACAAGAATGAA
GGAAGTTTACATATGTCCTTCGTGACCGATCTGAATTCTGGTATGGACAAGTATATCAGCTTCA
GAAGTCATTGCAATGGCAGAAATAAGATTTGAAACCATATTCACCTTGAACTTGAAGTCCCCCA
CCACCAAAAAATAGGTGATCTGTTCTTGATAAGCACTGCTCCTTCAAATCTTTTGTGGGAGGAC
GCCCATTCTTGAAGTAAAACTATAAAACATATTGGTCCACGAAAATTTTCCGCTTAAACAATGA
CAGTAGCAACAAAAGCTTCAATAATGGTTACAAGGACAGGTGCAAAATACCTGAGGTATAACTT
CTCTTACTGGTTCACTAACTAATTTTAATGGAGAGCCCAAGGATGATGGTCCAGCTCCAGATCC
TCGTCTCATAACACGAGGGGAACCAGACGTGCTCCTAGGAGAAAGTGGTGGAGCACTACCAGCA
GGAAACATCGAAGGTAGAGAACTACTTGAAGCAGCATTTGTGCTAGCAGAGCTTCCAGCAACAT
TAAGCACAGCACCAGTCTTTGCATCATCAATCAAAGACTTCAC
Conservation Information
Conserved circRNAs osi_circ_008508 osa_circ_007097
PMCS 0.030290899
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b