Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d032708_circ_g.4 |
ID in PlantcircBase | zma_circ_000816 |
Alias | circ244 |
Organism | Zea mays |
Position | chr1: 235656459-235657077 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI |
Parent gene | Zm00001d032708 |
Parent gene annotation |
Serine/threonine protein phosphatase 2A regulatory subunit B''al pha |
Parent gene strand | - |
Alternative splicing | Zm00001d032708_circ_g.1 Zm00001d032708_circ_g.2 Zm00001d032708_circ_g.3 |
Support reads | 7 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | CT-TA |
Number of exons covered | Zm00001d032708_T014:3 Zm00001d032708_T015:3 Zm00001d032708_T012:3 Zm00001d032708_T026:3 Zm00001d032708_T019:3 Zm00001d032708_T003:3 Zm00001d032708_T010:3 Zm00001d032708_T024:3 Zm00001d032708_T017:3 Zm00001d032708_T011:3 Zm00001d032708_T007:3 Zm00001d032708_T004:3 Zm00001d032708_T001:3 Zm00001d032708_T018:3 Zm00001d032708_T005:3 Zm00001d032708_T006:3 Zm00001d032708_T008:3 Zm00001d032708_T002:3 Zm00001d032708_T022:3 Zm00001d032708_T009:3 Zm00001d032708_T020:3 Zm00001d032708_T021:3 Zm00001d032708_T025:3 |
Conservation Information | |
---|---|
Conserved circRNAs | osi_circ_008508 osa_circ_007097 |
PMCS | 0.030290899 |
Functional Information | |
---|---|
Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chen et al., 2017b |