Detail information of Os10g0476600_circ_g.2


General Information
CircRNA Name Os10g0476600_circ_g.2
ID in PlantcircBase osa_circ_007097
Alias NA
Organism Oryza sativa
Position chr10: 17758710-17759355  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0476600
Parent gene annotation Similar to Protein phosphatase 2A 62 kDa B'' regulatory subunit
(Protein phosphatase 2A 62 kDa B regulatory subunit) (Protein ph
osphatase 2A alpha). (Os10t0476600-01);Similar to Protein phosph
atase 2A 62 kDa B'' regulatory subunit (Protein phosphatase 2A 6
2 kDa B regulatory subunit) (Protein phosphatase 2A alpha). (Os1
0t0476600-02)
Parent gene strand +
Alternative splicing Os10g0476600_circ_g.1 Os10g0476600_circ_g.3 Os10g0476600_circ_g.4 Os10g0476600_circ_g.5 Os10g0476600_circ_g.6 Os10g0476600_circ_g.7 Os10g0476600_circ_g.8 Os10g0476600_circ_g.9 Os10g0476600_circ_g.10 Os10g0476600_circ_g.11 Os10g0476600_circ_g.12 Os10g0476600_circ_g.13 Os10g0476600_circ_g.14 Os10g0476600_circ_g.15
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0476600-01:3
Os10t0476600-02:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATTTAGATCAGTCACAAAAGATATATGCAAACTTCCATCGTTCTTCTCCAGTGTTCTTTTCAA
GAAGATCGATGCTGCAGGCTCTGGAACTGTCACAAGgtgaactctttgattgaagatgcaaaag
ctggtgctacattgaatgttactgggagctctgctagcacaaatgctgcttcaagtggttcttt
gccatcaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 452
Transcript exons: 17758710-17758958,17759069-17759171,17759256-17759355
GTGAACTCTTTGATTGAAGATGCAAAAGCTGGTGCTACATTGAATGTTACTGGGAGCTCTGCTA
GCACAAATGCTGCTTCAAGTGGTTCTTTGCCATCAATGTTTCCGGCTGGTAGTGCTCCTCCCCT
TTCTCCTAGAAGCACTTCTGGCTCCCCCCGTGTTATGAGGCGAGGATCTGGAGCTGGACCATCA
TCCTTGGGATCTCCACTAAAAGTAGTTAGTGAACCAGTGAGGGAGGTTATACCCCAGTTTTACT
TCAAATATGGGCGCCCTGCTCCAAAAGATTTGAAGGAGCAATGCTTATCTAGAATAGATCACCT
CTTTTTTGCAGGGGAGGGACTCCAGATTCAAGAATTTAGATCAGTCACAAAAGATATATGCAAA
CTTCCATCGTTCTTCTCCAGTGTTCTTTTCAAGAAGATCGATGCTGCAGGCTCTGGAACTGTCA
CAAG

Genomic sequence GTGAACTCTTTGATTGAAGATGCAAAAGCTGGTGCTACATTGAATGTTACTGGGAGCTCTGCTA
GCACAAATGCTGCTTCAAGTGGTTCTTTGCCATCAATGTTTCCGGCTGGTAGTGCTCCTCCCCT
TTCTCCTAGAAGCACTTCTGGCTCCCCCCGTGTTATGAGGCGAGGATCTGGAGCTGGACCATCA
TCCTTGGGATCTCCACTAAAAGTAGTTAGTGAACCAGTGAGGGAGGTTATACCCCAGGTACTTC
TTATCTATTTTTGCAGTTAGTATTATTGTTGCGTTATTTCTGTTTGTCATCATTCGACCATATA
TTTATTTCTAATACTTCTTTGCATGCTATATGTTTTCAGTTTTACTTCAAATATGGGCGCCCTG
CTCCAAAAGATTTGAAGGAGCAATGCTTATCTAGAATAGATCACCTCTTTTTTGCAGGGGAGGG
ACTCCAGATTCAAGGTGATTGCTTTGAGGATTTCATTTCTTGATTTTACGCATTAAAAATACAT
TTCTAAGTTTGAATATTATATTTCTCCATATCAGAATTTAGATCAGTCACAAAAGATATATGCA
AACTTCCATCGTTCTTCTCCAGTGTTCTTTTCAAGAAGATCGATGCTGCAGGCTCTGGAACTGT
CACAAG
Conservation Information
Conserved circRNAs osi_circ_008508 zma_circ_000816
PMCS 0.333509275
Functional Information
Coding potential Y
Potential coding position 17758810-17758710(+)
17759282-17758710(+)
Potential amino acid sequence MFPAGSAPPLSPRSTSGSPRVMRRGSGAGPSSLGSPLKVVSEPVREVIPQFYFKYGRPAPKDLK
EQCLSRIDHLFFAGEGLQIQEFRSVTKDICKLPSFFSSVLFKKIDAAGSGTVTR*(+)
MQTSIVLLQCSFQEDRCCRLWNCHKVNSLIEDAKAGATLNVTGSSASTNAASSGSLPSMFPAGS
APPLSPRSTSGSPRVMRRGSGAGPSSLGSPLKVVSEPVREVIPQFYFKYGRPAPKDLKEQCLSR
IDHLFFAGEGLQIQEFRSVTKDICKLPSFFSSVLFKKIDAAGSGTVTR*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017