Detail information of Zm00001d032708_circ_g.1


General Information
CircRNA Name Zm00001d032708_circ_g.1
ID in PlantcircBase zma_circ_000813
Alias circ241
Organism Zea mays
Position chr1: 235652313-235657077  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI
Parent gene Zm00001d032708
Parent gene annotation Serine/threonine protein phosphatase 2A regulatory subunit B''al
pha
Parent gene strand -
Alternative splicing Zm00001d032708_circ_g.2 Zm00001d032708_circ_g.3 Zm00001d032708_circ_g.4
Support reads 3
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d032708_T012:7
Zm00001d032708_T019:8
Zm00001d032708_T009:8
Zm00001d032708_T020:7
Zm00001d032708_T018:8
Zm00001d032708_T021:8
Zm00001d032708_T011:7
Zm00001d032708_T024:8
Zm00001d032708_T017:7
Zm00001d032708_T013:5
Zm00001d032708_T003:8
Zm00001d032708_T025:8
Zm00001d032708_T022:7
Zm00001d032708_T007:8
Zm00001d032708_T004:7
Zm00001d032708_T014:8
Zm00001d032708_T002:8
Zm00001d032708_T026:8
Zm00001d032708_T005:8
Zm00001d032708_T010:7
Zm00001d032708_T006:8
Zm00001d032708_T008:7
Zm00001d032708_T015:8
Zm00001d032708_T001:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGAAGGTAGAGAACTACTTGAAGCAGCATTTGTGCTAGCAGAGCTTCCAGCAACATTAAGCAC
AGCACCAGTCTTTGCATCATCAATCAAAGACTTCACccaatattcaagactaggctcagatgat
ttgtcttcctctgataatataaagtaaacaaagtcttcataacccatctttccttctgtcatgc
ttgtgaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAATATTCAAGACTAGGCTCAGATGATTTGTCTTCCTCTGATAATATAAAGTAAACAAAGTCT
TCATAACCCATCTTTCCTTCTGTCATGCTTGTGAATTTCCTTGGGATCTAAAAGCAGTAAAAGG
GCCAATATAAGGACACAAAGCACAACATTTTGGTAATAAAGGGCTAAGGTTTTGATGCTAAAAT
TGAGTAGACTAACCTGTGCGAAAATTCTATCAACTATTCTATAGGTCAACGAATGGTTCCCATA
TTTGATGAGATTTTCCTTATCAATCAAAAAATCGTGGTCTGCATCCAGCTCCCAGAATTTGCAG
TAGATCACATAAAAGTGTTCATATGAGAAATATCTGCACCATGATCCAAGATTATTAACTCAGT
AAACGTTATACACAGTTAAGACTATATAAAGAAAACAGTGAACAAATGTAATCCACACAAAACA
AATGGAAGCACAGGAAAGGTACTCCGTTCCAAACTGTGAGTTGTTTTCGTTTTTCTAGGTGCAT
AGCTTTTGCTATGCACAAAAACATGCGATATGTCTAGATGTACAGTAAAAAAACTATGAATTAA
AAAACAAAATGACTTACAATTTGAAACAGAGGGAGTGCAAAAATGCATGTGTGCAACTGCATCA
TGATAAATAGTGATGAAAACCTCAGTTATGCTCAGAACTCATGGTAATACGCAATGAATAGACA
TAGCACCAACCAGTTCAACCCAAAAGCTTAAGCTAATAGAGAGAGGTAGACAATTCACTTGTAT
TCTAATATTCCTCCTTCATGTCGAGGCTCTCTCACCCAAGACGTGGAATGAGAATTGAGAGCAA
GCAACAATTATTTTATTTAATTGCGCTAACCAGGATTTGAACTCAAGACATCTAGGTTTGATAC
CATATTAAGTTGCATGCACCAACCAGTTCCAAACAATTGTATTCTAACAATTGATTACCTCAAC
ACTTTGTTGATATCTTCTTCCTCATCTAACTGCTGAAGTGCAGCAATTAAATTTCCACGTTTGA
GCTCTCTCAGAGTCAGATGACCATTCCCAGATCTATTTATGGAGTAAAAGATTCTGTATATTAC
AGTCTCCGCTGAAGAAAACATCAAGAAATGAATGTGACACAGCAAACATTAGCAACAGTTCAAA
ACATTCAGCAAATCTGATCTTAAAACAAAATAGATAGTTGAGTTAGTTTTAATGATGGTTGGTA
ATGCTCCAGATTTCATGCAACCAACACTTGTGGACTACCAGCATTTTCCAATAGCTGAGGGAAA
GAACTCAAATCAGGGTTGCCACGATTGCTTGTAAATTCCTATGGCAAGACCACGAAGTGAAAGA
CAAGGCTGTCACACTACACTACAGCTACTTTAAATGAAGAGGTATCATATTATGTGTCTGTGTC
TTTGTGACAGACAGCCTTACTGCAAAAACACATAAGAGCCCACAAAATCGTATTTAAAAAATGC
CTAGCAAAAGATCAATCAGCTGTAAACACCTAACACTGTAAGGATGCTGCTGTACCACTAAGTA
AAAGGCTTGCCATTCATATGTGCATTTCTGAAGAAATAGAAGAAAAAAAGCATGGAAAAGCACA
ACTATGAAGTGTAAATTGGAGTGAAGAATTAATTCTCAAGTCCGCTAATTCACTTGGATTTTGG
ATAGCAGGAGCCAGGAATTACCATATCTCTCCTGAAACTCGGGGGTCCCTTGTAAAAACTCTAA
GCCAGGGTGTGTTGCCAGTAGTTCTTTCAGGACAGGCTTGAAGTCATCCTGTACATGGAATATA
ACTTTTTTCCCATCAGTATGAAAGAATTCAGAATGACAAAGCTAAAATCTATGCCCATGTTAGC
ACTGAAAAAATTCAGAAGGAAATAACTGACCTGGGTGAGATATGTGTAACCTGGCTTTCTTAAT
ATTTCAAATATTTGACTAGCCATATCCATTGTAACCTTATTGTCGTTAATCCAGTACTCAACAA
ATGCATCCCTGTGTTTAGATAGAGTTAGACTACCTGCTTAAATCTGATATGGAATATCAACGCT
CTTCAGAACAATCAGTGTTAGAGGTAAACAGACTGCAATTTTACATATAAAATCATTAATCACT
AGTACAAATTACAATTTATCACATGTAAAGATGCAAGTTTGGTGAAAGGCGGGTCAGCCCAAAA
CCCACTCTTCCACACTGAACACTATCACCATCTAATAGTGTTTCGCTTTTCTTGTTTTCTAGTA
TTTACCGACTAAATGAAGTAGTGTGTGTCACTGGGTTCATTGACGCATTTGTTTCCCTAATTGT
TCATACCAAATAAAACATTACTAAACAAAATCACATTCCCAGATAATAATTAAGAAACTATGAA
ACAACGCAGAAGTTGAGTGATGTCAAATTTTACCATCAAAGCTATAGTGCATGTTAGATCTGAC
ACTGGTAGGGGAAAGGTAAGCTAGAAGCTGTAACACTTCTCTTAATAAACAAATTCAGGAAATC
ATGAAGCCTGCAACACAAAAGGTTCCAAACCAGTGGCTAAGGTAAAATCTAGCATTATAGGTAT
GAACAAAATCAAAGAAAAGCTAGCAACAATGATTCAAGGAGGAAGTGGGATAACATAAACCACT
TCTGCATGTATCGATGTTTTTTGCAATGGCAACGTTGCTAGACCGTGTAATCAGTAACCTATAT
AATTCCTTTGAAGAACAATATACAGATCAATGCAGCTTTCAGCCAATAATGGAGAACCTAACAC
CTAGCCTTGAAATGACATGCCCAAAAGTCCAGGCACTAGCCAAGCATGATATACACCACTAAAA
TTGTAAGGACTTGCATGAACAAAGATGAAACTAACTAATCAAAATGTATACTCCCTCCATTCCA
AAATGTCAGGTGTTTTATTTTCTCAAGTCAAAAGTCTCTAGCTTCGAAAATGTATGGAAAATAT
AATGCCCAAAAGGAAAAATTATAAAAGAAGGTCGTTTTAGCCCTCTCAACTATTCTTAAAATGC
AAGTCAACCTTGAACTTTTGTGCACCTTTTACCCTTTTCTTCCTTAATAAATGTCAATACTCTA
ACTAGGGATGAAAATGGGTATCCAAATAGTTAGAACAAATTTAATATTTCAAAATAGATTTTAT
GCTAATCTTTTCTTATGTTATCAAAATCAAATACATTATTATAAATAAGAATACAATTTTGCAT
AACTTTTTTATACATTATTTGCTCCCTACAACAAAAAAGGTGAAAAAAATATATGTATCTGTAT
CCGAATTTTATATCTAGCATTTGAGAAGATATATGATAAATTTGAAGTTTACCTTTTATGAATC
TTTACAAGTTCAATGCTGAAAACAAGAATTTAAACTTGCATAGCCGTTTCTATATCCTATTTAT
TCACAATTAAAAAAAGACCAAAAAATTGGTATCCGAATAAGTATCTGTTTTCATCCCTCTTTCC
CAATGCAGAATAACGAAGGGCAGCAAGGTCATTTGATCTACTTTCTTAATATGTGTGCACAAGT
CTTAAACGCCATTTAGAATAAGAGGGTTTAGCATCTACTATACCAAATAAATGCACTATCATGG
TGGACTTAATGAAACTAAATAACAAAACTGATGTTGTAGATGTTGGTGTGTTTTTTCTATAAAC
TTGAACAGAGCAAAGTTTGACTTAGGTCAAACCAAAAAACACATTAAATTTTGGTGCTTTGTGA
GTGGGGGAGCATACAAGATAGCAACCTCATTATTGTCTTAATGGTCCTTTTAGTACTTAAACAG
CCCATGGTTGATTAAAGAACCATGTGATGGCTTAAAGCTAATGGTCAACATGTGATATCCAACT
AAAGTGCTGAAAACCAATGATAAGTTGTGGCAAAAGTTAAGAATAATGTTTGTCCACAAGTGGC
AAAGGAAGTAAAAAGGCATAAACACAATTCTGATCCTAATCAAGTAGAACTGGCATTTAGCAAG
TTTACAAGCTTCAGGGAGGACACAGAAGAAACCAACACACTAAAGAATAAAGAACAAACTGAAA
CAGGATAAGGAGACACTAGGCTGACATATAGAAGTAACTATAGTTCCTCAAATGGATTTTTCAA
TCATTACATGGGCATCACCATAGACCTTGGGTTCAGATGTCGAAATCATACCTTGAGACAGTTC
TAGTGCATTCAACATCGATTTTCTTGAAAAGGACACTAGACAAGAATGAAGGAAGTTTACATAT
GTCCTTCGTGACCGATCTGAATTCTGGTATGGACAAGTATATCAGCTTCAGAAGTCATTGCAAT
GGCAGAAATAAGATTTGAAACCATATTCACCTTGAACTTGAAGTCCCCCACCACCAAAAAATAG
GTGATCTGTTCTTGATAAGCACTGCTCCTTCAAATCTTTTGTGGGAGGACGCCCATTCTTGAAG
TAAAACTATAAAACATATTGGTCCACGAAAATTTTCCGCTTAAACAATGACAGTAGCAACAAAA
GCTTCAATAATGGTTACAAGGACAGGTGCAAAATACCTGAGGTATAACTTCTCTTACTGGTTCA
CTAACTAATTTTAATGGAGAGCCCAAGGATGATGGTCCAGCTCCAGATCCTCGTCTCATAACAC
GAGGGGAACCAGACGTGCTCCTAGGAGAAAGTGGTGGAGCACTACCAGCAGGAAACATCGAAGG
TAGAGAACTACTTGAAGCAGCATTTGTGCTAGCAGAGCTTCCAGCAACATTAAGCACAGCACCA
GTCTTTGCATCATCAATCAAAGACTTCAC
Conservation Information
Conserved circRNAs osa_circ_007101
PMCS 0.004354683
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b