Detail information of Os11g0433200_circ_g.4


General Information
CircRNA Name Os11g0433200_circ_g.4
ID in PlantcircBase osa_circ_009248
Alias NA
Organism Oryza sativa
Position chr11: 14003399-14005326  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os11g0433200
Parent gene annotation Protease-associated domain, PA domain containing protein. (Os11t
0433200-01);Similar to predicted protein. (Os11t0433200-02)
Parent gene strand +
Alternative splicing Os11g0433200_circ_g.1 Os11g0433200_circ_g.2 Os11g0433200_circ_g.3 Os11g0433200_circ_g.5
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0433200-01:4
Os11t0433200-02:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCCCATACATCAATTTGATACCGTGTAGATTTGATAGAGCAAGCAAAAGGGGCCTCTTCAATG
GGTATTTTCTATGGCTGACGGTGGGATATGCTGTTGggaatctgcctgatgataactgtgcttc
aaatggcacgcttaccaaatatcagggtattgccatgtctttaagtttaatgtagtcgtgcaaa
acctatat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAATCTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGGGTATTGCCAT
GTCTTTAAGTTTAATGTAGTCGTGCAAAACCTATATGTTTCATATGTGTATCAGAATTATTCAT
CATGACTATAACTTTGCAGGTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTC
TGGGTGTTCATTTCACCTCTTATATTCCATGAAAGTGTCATGATTGCAGTAAGTGCATGATTTT
TATTTTTTTGCAACAATCTTTTTATTACTTACTGTTTAGTACTGTGGATTTATCCAGTGGTGAT
AATAGTACCATAATATGCTGCATACGTGGCTCATGAATCTACTAGTTTCCATGTTATTTTCAAA
ACCAGATAGTAGCACATGCTTACTAATAGTAATAGCGTACTATTTTGTTAGTTTGTTCTATGTT
TCAATCTAATTCGAAAGCATTCACTTGGAGGTTAGAAAATTTGGTGATAAGACAATTCATATAA
GTTTGATATGTGTATCTTCAGTTAGATCTGTCCTGTAAGATATACCTTTTATCTATTATGAAGT
GTTATAGTGTTAGATATGATTCTATCCATACTGCACAGGTTGCTCGTGGTGATAACTCTGGGGA
AGCAATTCCGATGCTCTTAAGAATACCTCGTTTCTTTGATCCATGGGGTGGCTATGACATGATA
GGCTTTGGTGACATTATTTTCCCTGGATTGCTAGTTGCATTCAGCTACAGGTATTATACTATAT
ATATTGCTGCAATATAAGTTGTAACTTCTCTTTTGATGCCTTGGTTTCACTGGACGCTAAAGTG
TCGGTAGGTTGGTAAATATACTGTTGATGAGGAAAACATAATCCCAAATCAAAACAGTGAAGTT
GTAAACCATCTGAAAACTTTAGGAACACTTACCGTAGGGTGTAGTTTTATTTAAAATCAAATGA
TACTGAGAATGTTAGCAGAAAATGGAATTCACCAATCACCATATGAAAGCAATATGCTAATTGG
CTCCTGAAAGTTCCTATCACGTTTCATGATTTGTTTGATTGCTAATTAAGTTAGTGTACCATGG
TACCAAGATGTTACGTGGTGGAAAAGAGGATCAAACACCATGTTTCTGTTTGAATTAATGACCT
TTGATTTTACACTGTTCTGTCATCAAGGAACATAAAGGCAATGAGCCAGTGGTTGATTCCAAAA
TTTGCCTTACCAAAAATATTGGTAATGCCAATAGTACCACTGGTCTTGCCAATGGAATCAGAGT
CTATTTGGATTATCAGAGTTATACATTACCTATACAACCTTACCAAAATTTTGATTTCGCCAAC
ACATTGGTGGTATTCTTGTTGGTAGGACAACAAATACACCTTATATCACCATTTTTTTTTTGTT
AATGTTGAAACTCAACTTTAAGGCATAAAAACCTCTCCCAATGGTTTCGTACTGTTGGCTAATT
TAGTCCTTTATTTGGTATGTTGGAAATAAAGTATGTTCTGTTGTAATCAATTCATCATGCTATA
ATTTGACTTGTCAAGCAGAATATAATTAACTGTTTAGGATTCCGAAGTTAGAAATACCTGTTTT
TATGTGGTAATCGATTCATGTTGTAATTGATTTTACCTGTTTTTATTTTCATCCTTGCATAATG
GATTTCACTCTTGTTAACATAGAAAATTGGGGCCAGGCATCTTATTATATATGCCGGCGTTTGT
TTGATGGTTTCATTATTTCTCTGTGAGGTTTAATTAGCCCTTTCCATATCTGTTGTGTTTACTT
ATGACTATTTCAATTATATATATTCAATCATGTTTACCCCCATACATCAATTTGATACCGTGTA
GATTTGATAGAGCAAGCAAAAGGGGCCTCTTCAATGGGTATTTTCTATGGCTGACGGTGGGATA
TGCTGTTG
Conservation Information
Conserved circRNAs osi_circ_008983
PMCS 0.111017527
Functional Information
Coding potential Y
Potential coding position 14003412-14003562(+)
14005319-14003562(+)
Potential amino acid sequence MITVLQMARLPNIRVASALLSAAFVYDVFWVFISPLIFHESVMIAVARGDNSGEAIPMLLRIPR
FFDPWGGYDMIGFGDIIFPGLLVAFSYRFDRASKRGLFNGYFLWLTVGYAVGNLPDDNCASNGT
LTKYQGCISSS*(+)
MLLGICLMITVLQMARLPNIRVASALLSAAFVYDVFWVFISPLIFHESVMIAVARGDNSGEAIP
MLLRIPRFFDPWGGYDMIGFGDIIFPGLLVAFSYRFDRASKRGLFNGYFLWLTVGYAVGNLPDD
NCASNGTLTKYQGCISSS*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017