Detail information of Os11g0433200_circ_g.5


General Information
CircRNA Name Os11g0433200_circ_g.5
ID in PlantcircBase osa_circ_009249
Alias NA
Organism Oryza sativa
Position chr11: 14004153-14005200  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os11g0433200
Parent gene annotation Protease-associated domain, PA domain containing protein. (Os11t
0433200-01);Similar to predicted protein. (Os11t0433200-02)
Parent gene strand +
Alternative splicing Os11g0433200_circ_g.1 Os11g0433200_circ_g.2 Os11g0433200_circ_g.3 Os11g0433200_circ_g.4
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CA-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCTTATTATATATGCCGGCGTTTGTTTGATGGTTTCATTATTTCTCTGTGAGGTTTAATTAGC
CCTTTCCATATCTGTTGTGTTTACTTATGACTATTTgtattatactatatatattgctgcaata
taagttgtaacttctcttttgatgccttggtttcactggacgctaaagtgtcggtaggttggta
aatatact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATTATACTATATATATTGCTGCAATATAAGTTGTAACTTCTCTTTTGATGCCTTGGTTTCAC
TGGACGCTAAAGTGTCGGTAGGTTGGTAAATATACTGTTGATGAGGAAAACATAATCCCAAATC
AAAACAGTGAAGTTGTAAACCATCTGAAAACTTTAGGAACACTTACCGTAGGGTGTAGTTTTAT
TTAAAATCAAATGATACTGAGAATGTTAGCAGAAAATGGAATTCACCAATCACCATATGAAAGC
AATATGCTAATTGGCTCCTGAAAGTTCCTATCACGTTTCATGATTTGTTTGATTGCTAATTAAG
TTAGTGTACCATGGTACCAAGATGTTACGTGGTGGAAAAGAGGATCAAACACCATGTTTCTGTT
TGAATTAATGACCTTTGATTTTACACTGTTCTGTCATCAAGGAACATAAAGGCAATGAGCCAGT
GGTTGATTCCAAAATTTGCCTTACCAAAAATATTGGTAATGCCAATAGTACCACTGGTCTTGCC
AATGGAATCAGAGTCTATTTGGATTATCAGAGTTATACATTACCTATACAACCTTACCAAAATT
TTGATTTCGCCAACACATTGGTGGTATTCTTGTTGGTAGGACAACAAATACACCTTATATCACC
ATTTTTTTTTTGTTAATGTTGAAACTCAACTTTAAGGCATAAAAACCTCTCCCAATGGTTTCGT
ACTGTTGGCTAATTTAGTCCTTTATTTGGTATGTTGGAAATAAAGTATGTTCTGTTGTAATCAA
TTCATCATGCTATAATTTGACTTGTCAAGCAGAATATAATTAACTGTTTAGGATTCCGAAGTTA
GAAATACCTGTTTTTATGTGGTAATCGATTCATGTTGTAATTGATTTTACCTGTTTTTATTTTC
ATCCTTGCATAATGGATTTCACTCTTGTTAACATAGAAAATTGGGGCCAGGCATCTTATTATAT
ATGCCGGCGTTTGTTTGATGGTTTCATTATTTCTCTGTGAGGTTTAATTAGCCCTTTCCATATC
TGTTGTGTTTACTTATGACTATTT
Conservation Information
Conserved circRNAs NA
PMCS 0.101151058
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017