Detail information of Os11g0433200_circ_g.2


General Information
CircRNA Name Os11g0433200_circ_g.2
ID in PlantcircBase osa_circ_009246
Alias NA
Organism Oryza sativa
Position chr11: 13999003-14004152  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os11g0433200
Parent gene annotation Protease-associated domain, PA domain containing protein. (Os11t
0433200-01);Similar to predicted protein. (Os11t0433200-02)
Parent gene strand +
Alternative splicing Os11g0433200_circ_g.1 Os11g0433200_circ_g.3 Os11g0433200_circ_g.4 Os11g0433200_circ_g.5
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0433200-02:10
Os11t0433200-01:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTAAGAATACCTCGTTTCTTTGATCCATGGGGTGGCTATGACATGATAGGCTTTGGTGACAT
TATTTTCCCTGGATTGCTAGTTGCATTCAGCTACAGgttaaggtgaagaattgggtaaatggaa
ctgaaggtacaattgttgttgggttgagtgcaagatttggagcctccgtgcctcgagatattca
tgaagctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.201891429
Functional Information
Coding potential Y
Potential coding position 14001240-13999009(+)
13999097-14004149(-)
Potential amino acid sequence MAIGTIVCASLWTEFVACEQVDERYNQLTRKDGPNSGTTNREDKEIFEISAKGAIVFILVASVF
LLLLFYFMSSWFVWLLIVLFCIGGIEGMHVCLVTLLTRICKDCGQKTVQLPFFGEVLTLSVLIV
PFCTIFAILWAVYRHASFAWIGQDILGICLMITVLQMARLPNIRVASALLSAAFVYDVFWVFIS
PLIFHESVMIAVARGDNSGEAIPMLLRIPRFFDPWGGYDMIGFGDIIFPGLLVAFSYRLR*(+)
MNISRHGGSKSCTQPNNNCTFSSIYPILHLNL*(-)
Sponge-miRNAs osa-miR2931
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017