Detail information of BGIOSGA035202_circ_g.2


General Information
CircRNA Name BGIOSGA035202_circ_g.2
ID in PlantcircBase osi_circ_008983
Alias Chr11:15183335_15185262(MH63RS2), Chr11:15248596_15250523(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr11: 11361914-11363841  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRI2
Parent gene BGIOSGA035202
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA035202_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA035202-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCCCATACATCAATTTGATACCGTGTAGATTTGATAGAGCAAGCAAAAGGGGCCTCTTCAATG
GGTATTTTCTATGGCTGACGGTGGGATATGCTGTTGgggaatctgcctgatgataactgtgctt
caaatggcacgcttaccaaatatcagggtattgccatgtctttaagtttaatgtagtcgtgcaa
aacctata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGAATCTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGGGTATTGCCA
TGTCTTTAAGTTTAATGTAGTCGTGCAAAACCTATATGTTTCATATGTGTATCAGAATTATTCA
TCATGACTATAACTTTGCAGGTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTT
CTGGGTGTTCATTTCACCTCTTATATTCCATGAAAGTGTCATGATTGCAGTAAGTGCATGATTT
TTATTTTTTTGCAACAATCTTTTTATTACTTACTGTTTAGTACTGTGGATTTATCCAGTGGTGA
TAATAGTACCATAATATGCTGCATACGTGGCTCATGAATCTACTAGTTTCCATGTTATTTTCAA
AACCAGATAGTAGCACATGCTTACTAATAGTAATAGCGTACTATTTTGTTAGTTTGTTCTATGT
TTCAATCTAATTCGAAAGCATTCATTTGGAGGTTAGAAAATTTGGTGATAAGACAATTCATATA
AGTTTGATATGTGTATCTTCAGTTAGATCTGTCCTGTAAGATATACCTTTTATCTATTATGAAG
TGTTATAGTGTTAGATATGATTCTATCCATACTGCACAGGTTGCTCGTGGTGATAACTCTGGGG
AAGCAATTCCGATGCTCTTAAGAATACCTCGTTTCTTTGATCCATGGGGTGGCTATGACATGAT
AGGCTTTGGTGACATTATTTTCCCTGGATTGCTAGTTGCATTCAGCTACAGGTATTATACTATA
TATATTGCTGCAATATAAGTTGTAACTTCTCTTTTGATGCCTTGGTTTCACTGGACGCTAAAGC
GTCGGTAGGTTGGTAAATATACTGTTGATGAGGAAAACATAATCCCAAATCAAAACAGTTAAGT
TGTAAACCATCTGAAAACTTTAGGAGCACTTACCGTAGGGTGTAGTTTTATTTAAAATCAAATG
ATACTGAGAATGTTAGCAGAAAATGGAATTCACCAATCACCATATGAAAGCAATATGCTAATTG
GCTCCTGAAAGTTCCTATCACGTTTCATGATTTGTTTGATTGCTAATTAAGTTAGTGTACCATG
GTACCAAGATGTTACGTGGTGGAAAAGAGGATCAAACACCATGTTTCTGTTTGAATTAATGACC
TTTGATTTTACACTGTTCTGTCATCAAGGAACATAAAGGCAATGAGCCAGTGGTTGATTCCAAA
ATTTGCCTTACCAAAAATATTGGTAATGCCAATAGTACCACTGGTCTTGCCAATGGAATCAGAG
TCTATTTGGATTATCAGAGTTATACATTACCTATACAACCTTACCAAAATTTTGATTTCGCCAA
CACATTGGTGGTATTCTTGTTGGTAGGACAACAAATACACCTTATATCACCATTTTTTTTTGTT
AATGTTGAAACTCAACTTTAAGGCATAAAAACCTCTCCCAATGGTTTCGTACTGTTGGCTAATT
TAGTCCTTTATTTGGTATGTTGGAAATAAAGTATGTTCTGTTGTAATCGATTCATCATGCTATA
ATTTGACTTGTCAAGCAGAATATAATTAACTGTTTAGGATTCCGAAGTTAGAAATACCTGTTTT
TATGTGGTAATCGATTCATGTTGTAATTGATTTTACCTGTTTTTATTTTCATCCTTGCATAATG
GATTTCACTCTTGTTAACATAGAAAATTGGGGCCAGGCATCTTATTATATATGCCGGCGTTTGT
TTGATGGTTTCATTATTTCTCTGTGAGGTTTAATTAGCCCTTTCCATATCTGTTGTGTTTACTT
ATGACTATTTCAATTATATATATTCAATCATGTTTACCCCCATACATCAATTTGATACCGTGTA
GATTTGATAGAGCAAGCAAAAGGGGCCTCTTCAATGGGTATTTTCTATGGCTGACGGTGGGATA
TGCTGTTG
Conservation Information
Conserved circRNAs osa_circ_009248
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021