Detail information of AT2G06990_circ_g.7


General Information
CircRNA Name AT2G06990_circ_g.7
ID in PlantcircBase ath_circ_012991
Alias Ath_circ_FC1178
Organism Arabidpsis thaliana
Position chr2: 2899180-2900027  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G06990
Parent gene annotation DExH-box ATP-dependent RNA helicase DExH10
Parent gene strand +
Alternative splicing AT2G06990_circ_g.1 AT2G06990_circ_g.2 AT2G06990_circ_g.3 AT2G06990_circ_g.4 AT2G06990_circ_g.5 AT2G06990_circ_g.6 AT2G06990_circ_g.8
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G06990.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTCATTCCTGTTGATAAATCAAACGAACAGGTAAATTTAAGGAATGAACTTACCAAACCATTG
CAGCAGCTCCAAGATAGTGCACGGAAAATAGCAGAGtctgaagatgatcaacaaatcaagagtt
tccagaggaaagcggaggtgaattatgaaattcaacagctaaaatcgaaaatgcgtgattccca
ggtatatt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 396
Transcript exons: 2899180-2899272,2899608-2899761,2899879-2900027
TCTGAAGATGATCAACAAATCAAGAGTTTCCAGAGGAAAGCGGAGGTGAATTATGAAATTCAAC
AGCTAAAATCGAAAATGCGTGATTCCCAGCTCCAAAAGTTTCGAGATGAGCTTAAGAACCGATC
TCGGGTATTAAAGAAACTTGGACACATTGATGCTGATGGTGTCGTCCAGGTAAAGGGACGAGCT
GCGTGCTTGATAGACACAGGGGATGAATTGCTTGTCACTGAACTGATGTTTAATGGTACTTTTA
ATGATCTGGATCATCACCAAGTAGCAGCCCTTGCAAGCTGTTTCATTCCTGTTGATAAATCAAA
CGAACAGGTAAATTTAAGGAATGAACTTACCAAACCATTGCAGCAGCTCCAAGATAGTGCACGG
AAAATAGCAGAG

Genomic sequence TCTGAAGATGATCAACAAATCAAGAGTTTCCAGAGGAAAGCGGAGGTGAATTATGAAATTCAAC
AGCTAAAATCGAAAATGCGTGATTCCCAGGTATATTACTTACTCTCTCACCCATGAGTAAATGA
TGCATGGAATCCTTTATTATGTGTGTCCTATCTGCAAGGAATATCTCCTTTCCAGTAGGGTTGT
TACTTGGCATGATAAATTCTGCTTGTATCCAATTTGTACTGCTTTCGATTTTCCTATACTTTTT
TCCCGTTTAGCTACGTATAGACTAAAACAATATAATAGGGAGACGAACTTTTACGTTTAAAAGC
AAACAAATTGTAGAATGTTCATTGATTACTAGACTCACTGCTAGAGTTTAAGATTTCTTTTCAT
CCCTCTTGTGTCTTACAGCATATTTTTTTTTTTTATCTCTGCAGCTCCAAAAGTTTCGAGATGA
GCTTAAGAACCGATCTCGGGTATTAAAGAAACTTGGACACATTGATGCTGATGGTGTCGTCCAG
GTAAAGGGACGAGCTGCGTGCTTGATAGACACAGGGGATGAATTGCTTGTCACTGAACTGATGT
TTAATGGTATGACAACTGCTTTAGCTACACAGTTCTAAGTGTAGGCCTTTTAGGTGACTGAGGC
AGTGTATAATGGTTGTATCACACTATATATAATTGCGTTGTGTGTTCCTTACCTACCAGGTACT
TTTAATGATCTGGATCATCACCAAGTAGCAGCCCTTGCAAGCTGTTTCATTCCTGTTGATAAAT
CAAACGAACAGGTAAATTTAAGGAATGAACTTACCAAACCATTGCAGCAGCTCCAAGATAGTGC
ACGGAAAATAGCAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.221578427
Functional Information
Coding potential Y
Potential coding position 2899258-2900024(+)
Potential amino acid sequence MRDSQLQKFRDELKNRSRVLKKLGHIDADGVVQVKGRAACLIDTGDELLVTELMFNGTFNDLDH
HQVAALASCFIPVDKSNEQVNLRNELTKPLQQLQDSARKIAESEDDQQIKSFQRKAEVNYEIQQ
LKSKMRDSQLQKFRDELKNRSRVLKKLGHIDADGVVQVKGRAACLIDTGDELLVTELMFNGTFN
DLDHHQVAALASCFIPVDKSNEQVNLRNELTKPLQQLQDSARKIAESEDDQQIKSFQRKAEVNY
EIQQLKSKMRDSQLQKFRDELKNRSRVLKKLGHIDADGVVQVKGRAACLIDTGDELLVTELMFN
GTFNDLDHHQVAALASCFIPVDKSNEQVNLRNELTKPLQQLQDSARKIAESEDDQQIKSFQRKA
EVNYEIQQLKSKMRDSQLQKFRDELKNRSRVLKKLGHIDADGVVQVKGRAACLIDTGDELLVTE
LMFNGTFNDLDHHQVAALASCFIPVDKSNEQVNLRNELTKPLQQLQDSARKIAE(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a