Detail information of BGIOSGA032263_circ_g.5


General Information
CircRNA Name BGIOSGA032263_circ_g.5
ID in PlantcircBase osi_circ_002746
Alias 10:3495085|3499749
Organism Oryza sativa ssp. indica
Position chr10: 3495085-3499749  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA032263
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA032263_circ_g.3 BGIOSGA032263_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA032263-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCTATCTCTCCTGGTCTACTTGGAGCTTGAGGAAGCATGTCAGCATCATTCTCATCAGGTTTG
ATTAAGCCCACATAGCTTTGCCAGTTAAGCCACCAGctggaatttatcaacaattatagaatca
tttcgagctttatggtaattccagcattcctcagcaagttcttcatcaggacggccatcggcat
cctttgct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGAATTTATCAACAATTATAGAATCATTTCGAGCTTTATGGTAATTCCAGCATTCCTCAGCA
AGTTCTTCATCAGGACGGCCATCGGCATCCTTTGCTTCAATATATGGTTTCTTTTTCACACGGT
TGAGATCTTCATGCAGACCATCCAATAGAAATGCAAGTAACTCCTGCATAAAAGAGGGGCAATA
AGTAACAGATCAATCTTCTTTAACAAAATGTGAACAATCTAAATTGCCAAATTTTGTCAAATAA
ATATAGCTTATCCAAACAAGAACTAAACGACAAGATGAGGGAGGCACTAATATATCAAAAAGCA
TAATAAACAATCCCTTATTCCGAAAGACACATTTATTAAAGGTTGAAACAGGTAATATTACACA
ATGAAAAAAAAAATGTATGGAGAAATACATCAAGTTCTGAAAACAAGCGAAGCAGGGATGCATA
AGTAGTGATAAATAGGATGCATCAGTTCACAAAATGACAACAAACTGTATACAAGACGATGACG
GTTATAAAAGAGAAGATTACAGCAAGGAAGATAACAGGGATGCAATTAAAACAGATTCTAAAGA
TGGAAAACATATTCAGGAAAAGAGCTGAAAACTTGTGTCAATGTGTGGCCAAAAAGGATGCACC
ATTTATCAGAACAGCGAACAAGCCAAAAAGCAGAGACAATTTATCTCTTTGACAGGACATGTTG
ATTTATGCTACAAGTCGTTTTGACTTTTTTTCTAGTCAAACTTCTTTAAGTTTGACCAAGTTTA
TATAAAAATTTAGTAACATCTACAACACCAAATTAGTTTCATTAAAACTAACATTTAATATATT
TTGATAATATGTTTGTTTTATGTTGAAAATGTGTCTACATTTTTCTATAAACTTGGTCTAACTT
AAAAAAGTTTGACTAGGAAAAAAGTCAAAACGACTTATAACAAAAGTTTGAGAAACATAGATAT
AATCATAGTTTGACACAATTTAAATAAACAACCAACACTATGGTTAAAAAACAAATTTCACAAA
ACCTCAGGTTTGGAACGATTGTAACGCAAAATCCCAGCTTTTATAATTTGTTTCGAAGAACCCC
AGATTTTTGGCCACACTCTTATACCACTATTTATGCATAACACTTGTACAATAAAATAGTATGC
GGTATTGTTTTTAGTACATGTAAGAATTAGACCTGGGAGTTTTATTACCCAAAACCTAGGGTTT
TGTAATAAAATCTCACAAGAAATTAATGCATATGTACTTCGGAACTGAAATGTGCCTTAACACT
AACAGTGCACCGGTGTGTTGAAATGAAAATTAACTTCATAGTTCTGGGACACAACAGCATGTTA
TCTTAAAGTAAGAAATATGTTTATAATGTACGACTAATTAATGGAAGTTACAAAACAGAACAAA
GGTGCAAAACTCAGTGTCAGCACCATTTAACAGACATTTATAAGAAGTGTTTAGGAGAAACATT
CGGAGCAACCTGAGAATCATGTTGATTGTATCCACTGAACTGTGGAGCAAAACGAGAAAGTTTT
GTCTTGAATGGACGTGGAGCTATAGAAGTTCGACCAGCTGACCAAAGTTTTCTCAGTAATTCTC
CAAATGCTGTTGCAAGTTCACCCTGCTCAATGGAGATGTTCTCAGAAATCACCAATAAGATCAT
AAGTTCGCAATCTACATAATAGGACAACATGCATTACCTGTAGCCCAAGTGGATTTTCTGTATT
TATCTCCCGACTGTAATCCTGTAAAAAGTACTCCACCAATGGAGGTGTATGCACCAAGGATTGT
ATAGCACTGTTCATGAAACATGTATTTCCCAAGTTATGTAAACCACTCAGTCCATGGATATCAT
CCTTTGTGCCATTGGAGAAACTATAACCATCTTCTGCGTCCCTTAATAAAGGACTAAAGCTATT
ATCTTGGGAAAAACTGGAACCAAATCCAGATGAAAAACCATTTGAAAATGCAGGACCTCCAGCA
ATTGAAAACGATGATGTTGAGGGTTCCAACGGAATTAATGCTAGTTCATTATTTGATCTTGTAC
CAAGATCCGAACACCAAGCATCATCTGCCTTTGCCTCTATGATAATCTGCAAGCATAAAGAAAG
AAGTTGCATCTTCAGTTAATGTACAGACAGAAAATAGAAAATTGTTGGCTTGCCAACAAAATAG
GGGTAAATCGTTAAGAATAATAAGATTCAGGACACCCACAATACAGATAGTGAACATCTTAGAA
GCAATAGTACATATTCATACCAGTACATATTCATACCCGAACATTGCAATGGTGCAAATGTAAA
CCATATTCATATGATAAAACACACTGATCAGAAGCATATTCATATGATAAAGACAAATGAGCCA
ACTTTATTAACTCAAAAACAATTCTCATGTCAACCATAATAGAACTTGAAAAGTGCAAATGTAA
ATTAAGATAATAAATTAAGCAATATTTAGGAGTTAGACAATTTATGACAAAGTCATTATCCATG
TGCAAGGTGACATCCTAAGGCAGACAGCAGACCATAGATGAAAAGGGCGCATAGCAACAATAAC
AACAAAAAGCCAGCGACCATCTCGCTGCCAGAATAAAGGAAACAATCATAGGTTTCAGCAGATA
AAACAATAGATATGTGAATGGGAATTGCATAGTGCATAATACCTCCTGGTCCATCATCAGTTGA
GCTTCCTCAACCGTCTCATTAAGATTTATCAGTTTTTTTCCCTTTGTCTTTTGGTAAAAATCCC
AGATGTCAATCTGAAGCATTAAAGTAGATGGAGCAAAGAATCATATACATAACCATAACTGACA
CTACAGATAGAGATATTAAATGAATAAATGATGATGCTTGTACCTTAGACTGTTCGACGGACAA
AAGTGAGCAAACCAAGCTATAGAGCTCACTAACTTTGGCCTGAAAGCACCAAATACAAACGTCA
AAAAATAAGTCAAGTCAATTGCACAAGAAACTAGAGTATCCAAGAAAGAAGATAATAGAAAGTT
AACAAATTTACTGTTCAACAAAAGAGTATCTAAGAAAGAAGATAGTAGAAAGTTCATCTTTCTA
CTTTTTTAGTAAAAGTGCTATTAGTTCAAGCAGTTAGTAAAACCAGCATTCAAAGTATTTGCCA
TTGCGCATCAAATTTGTAACATTTTTTTCCTTCTGGTAATAGTCAACCAAAAATATCAGATCAA
ATTCTGAAATTCAAGGGCTCAGCATACCAAAGTAGAAGATCGCAACAAGCAGGTGATGAACAGA
TGCGATTTCTTTGACACTTCATCACAAAGAGGGAATCCTCATTGCTTTATTTCATATAATGCAA
ATGTGTAAGCACTGGTTTTTATTTGACAAATGTGACTCTCCAACAATGTGATCAAGGTATAAAG
AATGCCTAAACTGATCATCTAACCTATCAAATATAAGAAATGCTCCGATTTGTCCCACACAATA
AGCACAGATCAAGGAGGCATGATGGCTAAGATAAGCTAATGTGAAATACAACCAAATGTTAACC
ACACAACCTCTTTGAAGCAATAAATTAGGGCTGGATAGTGGAATCATCATTGTAATAACTACAC
TATTGATTTCATCATCAATGGATAACTATGGAGGGACTACATCCCAAAAGAAATGCCAAACATT
ATGAAACCAGGGAAGTTTAAAGGAGCATCAGTCGCATTATTGACGGTTAATTACATATGAAGCA
CAATGTCACAATATAAATCAAATATACCATACCTTTCTACTAATTCTGATAATTCTCTCCAAGC
TGTCTCTTCCATCAAATAATTTCAGACGGAGGGGATAGACATCCACAATGTAACTTCTGGAAGT
TGGACTACTACAAATTACTCTTCTTGAGAGTTCTGGTCCACCTTTGTACCTGAAAAGTATTCAT
GTGTCCATGAGTTGATAATCCCAATTGAAGAAGAATGTATTCAAGTACATTAGGCCATGGACAT
TAGGGATAAGTTATGGTTACACTAGTATTCTGGCATAATCCATTGAAGAGCAACCTGACCTCAT
GAGTGAAAACGCGTACAGTATGCATTTACCAGTTAGCACATCATTGTTTTAAACAAATATCAAT
AGGAAACAGAAAAATTGAATAGGGCAACAACTAATTGCCAACAGACTGAGCAAACAGGACTACA
AACCAGGCTTTTTTGGTTTGCACCTAAGTGGAGCACATGCAATCTACAATGTGGCATATCAAAG
CCCTGGCAGCCCAAGCTTGGTCAAATGAACAAGAGCGCCTAAAGAAAATAAGAACTAAAAAAAT
GTCGCAAAATGGAACTGTAGTTATATGATCAAATTTTAATCAGGCAACCATTTTCTCTCATGAC
AAAAAGTAAAGAGACAAACCCGTGGTTTTATGGGTACAACAAACTTTCTGACATGAAGGCAGTT
AAACAGACATATAACATTGCATACCATTCATGTAGCTTCCTCCATACTTCCTGGGGCACCAAAG
CGTAGTCATCTCCTTCCCTCAGGGTTCTTTGAAGCTCTGGCTCATCACCAATACTGCTGCTTTC
CTCTGAAACTAGCTTTGAGTTATCTATCTCTCCTGGTCTACTTGGAGCTTGAGGAAGCATGTCA
GCATCATTCTCATCAGGTTTGATTAAGCCCACATAGCTTTGCCAGTTAAGCCACCAG
Conservation Information
Conserved circRNAs osa_circ_006258*
PMCS
Functional Information
Coding potential Y
Potential coding position 3499690-3499740(-)
Potential amino acid sequence MLPQAPSRPGEIDNSKLVSEESSSIGDEPELQRTLREGDDYALVPQEVWRKLHEWYKGGPELSR
RVICSSPTSRSYIVDVYPLRLKLFDGRDSLERIIRISRKAKVSELYSLVCSLLSVEQSKIDIWD
FYQKTKGKKLINLNETVEEAQLMMDQEIIIEAKADDAWCSDLGTRSNNELALIPLEPSTSSFSI
AGGPAFSNGFSSGFGSSFSQDNSFSPLLRDAEDGYSFSNGTKDDIHGLSGLHNLGNTCFMNSAI
QSLVHTPPLVEYFLQDYSREINTENPLGLQGELATAFGELLRKLWSAGRTSIAPRPFKTKLSRF
APQFSGYNQHDSQELLAFLLDGLHEDLNRVKKKPYIEAKDADGRPDEELAEECWNYHKARNDSI
IVDKFQLVA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021