Detail information of Os12g0264500_circ_g.7


General Information
CircRNA Name Os12g0264500_circ_g.7
ID in PlantcircBase osa_circ_011058
Alias Os_ciR317
Organism Oryza sativa
Position chr12: 9353886-9354007  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, CIRI, PcircRNA_finder, find_circ
Parent gene Os12g0264500
Parent gene annotation Similar to CoA-thioester hydrolase CHY1 (3-hydroxyisobutyryl-coe
nzyme A hydrolase). (Os12t0264500-01);Similar to CHY1. (Os12t026
4500-02);Conserved hypothetical protein. (Os12t0264500-03);Simil
ar to cDNA clone:J013000A22, full insert sequence. (Os12t0264500
-04)
Parent gene strand +
Alternative splicing Os12g0264500_circ_igg.1 Os12g0264500_circ_igg.2 Os12g0264500_circ_g.1 Os12g0264500_circ_g.2 Os12g0264500_circ_g.3 Os12g0264500_circ_g.4 Os12g0264500_circ_g.5 Os12g0264500_circ_g.6 Os12g0264500_circ_g.8 Os12g0264500_circ_g.9 Os12g0264500_circ_g.10 Os12g0264500_circ_g.11 Os12g0264500_circ_g.12 Os12g0264500_circ_g.13 Os12g0264500_circ_g.14 Os12g0264500_circ_g.15 Os12g0264500_circ_g.16 Os12g0264500_circ_g.17 Os12g0264500_circ_g.18 Os12g0264500_circ_g.19 Os12g0264500_circ_g.20 Os12g0264500_circ_g.21 Os12g0264500_circ_g.22 Os12g0264500_circ_g.23 Os12g0264500_circ_g.24 Os12g0264500_circ_g.25 Os12g0264500_circ_g.26 Os12g0264500_circ_g.27
Support reads 717/39
Tissues root/shoot, root, anther, seed, pistil
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os12t0264500-01:1
Os12t0264500-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGACGCTGCTCCTGCTGAGGCATCTGTAGATGCTGTGAACGGCAAGATTCCTCCTACCAAGgtg
tcttgcagagcaacgagtcctccgcgaaggtcgatgagccggtagctacagagaacag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 122
Transcript exons: 9353886-9354007
GTGTCTTGCAGAGCAACGAGTCCTCCGCGAAGGTCGATGAGCCGGTAGCTACAGAGAACAGTGA
CGCTGCTCCTGCTGAGGCATCTGTAGATGCTGTGAACGGCAAGATTCCTCCTACCAAG

Genomic sequence GTGTCTTGCAGAGCAACGAGTCCTCCGCGAAGGTCGATGAGCCGGTAGCTACAGAGAACAGTGA
CGCTGCTCCTGCTGAGGCATCTGTAGATGCTGTGAACGGCAAGATTCCTCCTACCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.505355191
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017