Detail information of Os12g0264500_circ_g.9


General Information
CircRNA Name Os12g0264500_circ_g.9
ID in PlantcircBase osa_circ_011060
Alias NA
Organism Oryza sativa
Position chr12: 9353886-9358255  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os12g0264500
Parent gene annotation Similar to CoA-thioester hydrolase CHY1 (3-hydroxyisobutyryl-coe
nzyme A hydrolase). (Os12t0264500-01);Similar to CHY1. (Os12t026
4500-02);Conserved hypothetical protein. (Os12t0264500-03);Simil
ar to cDNA clone:J013000A22, full insert sequence. (Os12t0264500
-04)
Parent gene strand +
Alternative splicing Os12g0264500_circ_igg.1 Os12g0264500_circ_igg.2 Os12g0264500_circ_g.1 Os12g0264500_circ_g.2 Os12g0264500_circ_g.3 Os12g0264500_circ_g.4 Os12g0264500_circ_g.5 Os12g0264500_circ_g.6 Os12g0264500_circ_g.7 Os12g0264500_circ_g.8 Os12g0264500_circ_g.10 Os12g0264500_circ_g.11 Os12g0264500_circ_g.12 Os12g0264500_circ_g.13 Os12g0264500_circ_g.14 Os12g0264500_circ_g.15 Os12g0264500_circ_g.16 Os12g0264500_circ_g.17 Os12g0264500_circ_g.18 Os12g0264500_circ_g.19 Os12g0264500_circ_g.20 Os12g0264500_circ_g.21 Os12g0264500_circ_g.22 Os12g0264500_circ_g.23 Os12g0264500_circ_g.24 Os12g0264500_circ_g.25 Os12g0264500_circ_g.26 Os12g0264500_circ_g.27
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os12t0264500-02:4
Os12t0264500-01:4
Os12t0264500-03:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGATAATTTTTTTTTGCTTTCATTTTCTAGATAACGTGTTTTTTGAGGTGCTTCACTGCTTAT
GAGGAAGATGATGGAGTTAAACTATTGATTGTGAAGgtgtcttgcagagcaacgagtcctccgc
gaaggtcgatgagccggtagctacagagaacagtgacgctgctcctgctgaggcatctgtagat
gctgtgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGTCTTGCAGAGCAACGAGTCCTCCGCGAAGGTCGATGAGCCGGTAGCTACAGAGAACAGTGA
CGCTGCTCCTGCTGAGGCATCTGTAGATGCTGTGAACGGCAAGATTCCTCCTACCAAGGTTACT
TCTTATGCTGTAATGGCCGATGCTTACATCAACTTAGGCTTGATCGTGGTCATAAATGTTCATG
TAGTTGATTCCCCAACATCCTCTGGAAGGTGTTACATTGACAGAAAGAACTGTACGTATTACTG
GGAATAAGAAGCAGATAGAAGCGGCAAAAGATATTATTAAGCAAGCTATGAGTCAGGTAATGTG
ATTCTGTGTTTTGCTTTTAACTGTTCCTTCATGCTGTAAATAACTAGTGATATTAGATGATGCT
GTGATCACACAATGATTGTACAATTCAATCATGCTGTGAAGAACTGGGTGATGCAATATGATGA
TGAGATGCTAAATTTGTACTTTATGCATTTCCATTCTATTCATGCTGTGATTATTTTTTCGTTG
AAAGTGAATTTCTGTTACTTGCTCTGGAATCATGGTGTGTATTATCGAACCTATTGTCTCTAGC
ATGACCTTACCATCTTCGTATGATATGATTGGTATAATTCAATATGTTTTTCTGTGCTCCCTGA
TAATAGAGGTCTTAGAAATATAGAAGGTGTTTTTTGGTTCTTGTTGAGTAAACCTGTGATTTCT
TTCAATCAGCTTAATTAAATTTGTGTCCTCTTATGGTTTGTGTTGATGTCATTTTATTGATACC
TTCTAGAACTGGTTCCAGCATTTGTTCATTTCATTTTTAATAGTTTCCATAAACTTGAAATGAA
TTTCTTTTACACAAAAATGCTTCAATGCAAATGCATTTTGTTGAATGAAACACAATTTTACTGC
GTCAAGGGAGTGCTGGTTTTTTCCTCGCTTATTACATCTTAAGTGTATAAACTAATGTCTCTTC
TACAATGGGCCTTGTATGAAGTATCGATCTTGAAATATAGCAGTGCATAATTGGACTGGAAGGT
AAGTTCTTCTTAATTGGTGATAAGTTTTAGTGTCTTTTTTGCCAAGTCAATGAGATGCCACATC
CTCGAGAGTATCATGTACATATTAATACTTAATTTATACATAATAATTTGTTTATAATCTTTCA
TGAGTTATAATCTCCTCGTGGTCAATTATTTTTTTGTGGTAATATTTGTCATCTTCCACATAAT
TCAGTATCTTGCCTTGCTTCCTTTTCAATGGTGAAATTTATTCCATGTCCATGAATTTTATGGT
TTTTGCGTTATCTTAAATTACAAATGATGCATGTTTAGTTTCCCATGAAAATGTTGTTCATTCA
TGGATTAACAATATGGAAACATGGTGTGCATGATCATATATGTCAACTATGAATGAAGTTAGAA
TAAATGATTTGACTCTGCAATGGATATCTTTTGAGGATCTGGGAGATATGTTCACGTTGACATA
AAAAGATATTCTAGTCTCGGTGGCTTGATAGTTCTTCATAGTTCGTCTAGAAGCAGAACTTACC
TTCGTGTATGATAGTGTGGTTGGAATTCAGTACTTCATCGTTAAAACTTTGGTGCTGTCACATG
ATCAATGAACAATTACTGTGGTACTAGTATCAATCTTTAGTCGGTTAGTCTTTTGAGTTTTGGT
AACTGCTTACTGCTAGATTAGATCTTATTATGTTTCCTATATAAGAAGTCAGAACTGACTCACC
AGGTTCCTCTCGCTTCCAGTTTCCATGATTTATTTTGTTTGAAGGTGCCAATTTGGAGTTGGAT
GAAGGGTAGGTCTGATGCTTGAAGGGAGTAGGTTTGAAGTTGAACCCTAAGATAAAACCGACCT
CCCCAGATGTAATAAGTAATTAGCATAATCTATTTGCAGTAACCTAGTCGAATTTATGAATTGC
TTGTGAACTACTACATGAGTATAAAAATTAGCAGCGCGAATGAAATATGACCATGTATGTGCCT
ATAATCGCCATGGTGATTAAGAAGTAATAAAACATTCAAGCCATCCATGGGCGATAGTCTACTA
CAGTTGTACACAGCCGCATCAGTAATCAAATTAGAGATCAGATTGCTGCTACAGACGCAATCGA
GCATCTTAAAACAACCTAAATGGATCAATCGATACGACCGAATCGAATAAGGAAAATCAACGGC
TAATTCGCGGATGCTTGATTGGGCTTTGATCCGTGAGCCAATGAGGCAGAGTGCAAAAAAAAAA
AACAGGAATCGAACGCGGGAGTGAACGGCGAGGTAGGGGAAGGAGGAGGAAGCAGCGAACTAAC
CTGGTGAGCGGATGCAAGCAGGGATGACGAGGAGGAGGAAGTCAAGTAAAGTATGACAAGCATC
CAAAGCGTTTTGACTGGATATATTTTTGACAAGCAACCAAACCTAACTGACATGAATCCCACGG
GTAGGGTAAATCTCAAAAATATATTTAATCCAAACGTTTTGGTTGCTTGTCATACTTCACTTGA
CTTCCTCGTCGTCGTCATTGCTGCTTGCATCCTCTCTGACTCTGAGACCGCGTGGAGATGTCTC
CCGCCGACTCCGACCAGGTTAGTTCGCCGCTTCCTCCTCCTTCCCCTACCTCGTCATTCACTCC
CGCGTTCGATTCCTGGTTTTTTTGCGCTTTGCCTCGTTGGCTCACGGATCGAAGCCTAATCAAC
CATCCGCGAATTAGGTGCTACTTTTCCTAATTTGATTCGGTCGTATCAATTGATCCATTTAGGT
TGTTTTAAGATGCTCGATTGCGTCTGTAGCAGCAATCTGATCTCTAATTTGATTGTTGATGCCG
CTGTGTACAACTGTAGTAGACAATTGCCTATGGATGGCGTGAATGTTTTATTATTCTTTAATCA
CCATGGCGATTGTAGTCACATACATGGTCATATTTCGTTCACTCTACTAATTTTTATATTATAC
TCTTGTAGTAGTTCACAGGCAATTCAGAAATTCGACTAGGTTACTGCAAACAGATTATGCTAAT
TACTTATCCAGTGTTACCGGGACACTGACACGGGTGTCGGAGTCCGACTCGGCAAGCTAAGAAA
AAATAGGATTCGGGGACTCGCTCCATAAATATGATTTTTAGTGAAAATATTATATATATCATCA
AATAAAACATACTCTTAGTCAGTAAAACACTAAAACATATGGTGTCACACATTATTCTGCACAG
AAGATCCTATCTTCTTATTAGTTAGGACAAAGACTGACAGCCAAAATAAGTGAATTTCATGTGT
AGAGGATCCCTTGTGCAGTTGTGCACAAAAAAACCCACTGCTATCCTGCCATCCACATGCCACT
ACCAATACTACTCATGAGTACTACTAGTTGTCTCTGGAGTACTACTAGTATGCCTGTGCATTGT
AGATGCACGCACGCAGCTACTTTTCCCATCGAGCTCTCCCATCCCATTCTCTCTCTCTCTTCTG
CCTTCTTTTTCCCATCCTCTCCCACAGGTCTGCCAGACAACCACCGGCACTGCTCGCCTATGGC
AGCTGAGAGAGACACCGCTAGTAGTGTCTGATGCGTGTCGAACCGTGTCAGACACGAGCTGACA
CGGGGATGCGTGTCGACATGGAAAATTTTTTTGGACTCGCGTGTCCCGGTAACACTGGTTACAT
CTGGGGAGGTCGGTTTTATCTTAGGATTCAACTTCAAACCATTCTGCTGTAGAATTCCTACAAA
TAAAAAAAAATAGCAGTCTTGTGTTTGACCCAGATTGTTTCTGTATCCTCTGTTCGTCTCAACT
GGCCTCAAGAACACAACTATTTTAAGGAATATATAAGCAGAATGGAGAGTTTAAACTCCATTCT
AATTTTGTTCGGTTTTGTCTGTTGTGCGTGTAATTAGGCATTTAATTTTCCTATTTCATGTTTT
TTTTGCCAAACGGCCAAATGGCCACACTCTGGCATTCGATGTAACAATTTATCATATCGGGAAC
TATTGTTACAATCTGTATCTTCTTTGTGTGCTGTCTACCACAAGTCTTATCTGTAAGATGTCAT
ATTTTTTATGATTGGTTCTACCTGTTACTGAGAATATCTTCTACTATTTCTCTTTTTGCCAGGT
TTTGGTAGAAGCAAATGGTGTAACACGGACATTGGTTTTGAATAGGCCAAAGCAGTTGAATGCC
CTCTCCTCTGCAATGGTATGACTTCTAAAGACAAAAACATGACAATGATTCAATAAGTAATGGG
GCATATATGGTATTAGCGACTATATATAGGGTGCAGGAACACTGATTTGATAATTTTTTTTTGC
TTTCATTTTCTAGATAACGTGTTTTTTGAGGTGCTTCACTGCTTATGAGGAAGATGATGGAGTT
AAACTATTGATTGTGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.095448453
Functional Information
Coding potential Y
Potential coding position 9354190-9353930(+)
9354097-9358218(-)
Potential amino acid sequence MSQVLVEANGVTRTLVLNRPKQLNALSSAMITCFLRCFTAYEEDDGVKLLIVKVSCRATSPPRR
SMSR*(+)
MLGNQLGRRNLAVHSIYRCLSRSSVTVLCSYRLIDLRGGLVALQDTFTINSLTPSSSS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017